Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.9e-120 435.3 223 100.0
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 7.0e-98 360.9 229 82.1
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 3.8e-96 355.1 229 81.7
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.7e-94 349.0 229 79.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.8e-70 269.2 234 63.7
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 3.4e-68 262.3 207 64.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 3.4e-68 262.3 139 95.0
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 5.7e-68 261.5 169 75.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 9.8e-68 260.8 195 66.7
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.3e-67 260.4 195 66.7
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.7e-67 260.0 193 67.4
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.7e-67 260.0 227 60.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.2e-67 259.6 199 67.8
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.9e-67 259.2 211 64.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.9e-67 259.2 189 68.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.9e-67 259.2 177 72.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.7e-67 258.8 169 75.1
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 4.9e-67 258.5 189 68.3
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.4e-67 258.1 195 67.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 8.3e-67 257.7 190 68.9
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.1e-66 257.3 195 66.2
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.1e-66 257.3 195 66.2
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.4e-66 256.9 208 63.5
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.4e-66 256.9 166 75.9
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.4e-66 256.9 166 75.3
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.4e-66 256.9 181 70.7
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.8e-66 256.5 212 62.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.8e-66 256.5 214 64.0
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.8e-66 256.5 189 67.7
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.4e-66 256.1 188 68.6
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.4e-66 256.1 217 60.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.4e-66 256.1 198 65.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.4e-66 256.1 198 65.7
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.4e-66 256.1 194 66.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.4e-66 256.1 212 61.3
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.0e-66 254.6 233 58.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 7.0e-66 254.6 218 61.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 7.0e-66 254.6 197 67.5
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 9.2e-66 254.2 217 61.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.2e-65 253.8 188 67.6
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 217 61.8
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.2e-65 253.8 189 68.3
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.6e-65 253.4 165 75.8
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.6e-65 253.4 171 69.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-65 253.1 190 67.9
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.0e-65 253.1 190 67.9
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.0e-65 253.1 177 69.5
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.0e-65 253.1 217 62.2
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.7e-65 252.7 222 63.1
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.7e-65 252.7 164 76.2
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.5e-65 252.3 188 67.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.5e-65 252.3 188 67.6
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.6e-65 251.9 191 67.5
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 7.8e-65 251.1 177 69.5
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.8e-65 251.1 176 72.7
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 7.8e-65 251.1 195 63.6
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.8e-65 251.1 188 68.1
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.8e-65 251.1 188 68.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.8e-65 251.1 188 68.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-64 250.8 187 68.4
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.0e-64 250.8 228 60.1
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.0e-64 250.8 213 62.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.3e-64 250.4 213 62.9
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.7e-64 250.0 195 64.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-64 250.0 193 65.8
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.3e-64 249.6 232 58.6
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.9e-64 248.8 182 67.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.9e-64 248.8 176 72.2
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.0e-64 248.4 178 69.7
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.0e-64 248.4 205 62.4
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 6.6e-64 248.1 157 77.7
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 6.6e-64 248.1 218 58.3
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.6e-64 248.1 209 60.8
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 8.6e-64 247.7 209 60.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.9e-63 246.5 204 64.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.9e-63 246.5 165 71.5
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-63 246.5 218 58.3
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.5e-63 246.1 209 60.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 4.3e-63 245.4 167 70.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 7.3e-63 244.6 218 57.8
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-62 243.8 215 57.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.2e-62 243.8 206 60.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.6e-62 242.3 202 61.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.6e-62 242.3 211 59.7
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 6.2e-62 241.5 230 55.7
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 6.2e-62 241.5 211 59.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.1e-61 239.2 201 61.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.1e-61 239.2 178 67.4
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 3.1e-61 239.2 155 75.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.1e-61 239.2 157 72.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 5.2e-61 238.4 222 57.7
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 5.2e-61 238.4 183 63.9
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 8.9e-61 237.7 162 72.2
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.5e-60 236.9 176 69.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.0e-60 236.5 211 57.8
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.0e-60 236.5 177 67.8
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.6e-60 236.1 212 60.4
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.6e-60 236.1 176 67.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.4e-60 235.3 227 54.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.8e-60 235.0 168 67.3
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.5e-60 234.6 212 59.0
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.5e-60 234.6 198 62.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.3e-59 233.8 199 60.8
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.7e-59 233.4 212 58.5
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.9e-59 232.6 185 65.4
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.9e-59 232.6 208 57.2
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 4.9e-59 231.9 193 61.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 8.3e-59 231.1 172 63.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.1e-58 230.7 171 70.2
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.9e-58 229.9 217 58.1
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.2e-58 229.2 167 63.5
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 5.4e-58 228.4 207 60.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 9.2e-58 227.6 168 66.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.2e-57 227.3 160 71.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.6e-57 226.9 206 59.7
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 2.0e-57 226.5 146 76.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.0e-56 224.2 139 76.3
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.7e-56 223.4 156 64.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.0e-56 222.6 156 66.0
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 6.6e-56 221.5 195 60.0
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 6.2e-54 214.9 164 64.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.1e-53 214.2 154 67.5
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.4e-53 213.8 162 62.3
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 5.2e-53 211.8 133 78.2
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.2e-53 211.8 178 59.6
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.8e-53 211.5 140 75.0
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.9e-53 211.1 129 79.1
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.0e-52 209.9 180 58.9
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 7.5e-52 208.0 201 52.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.1e-50 204.1 127 77.2
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 5.4e-50 201.8 127 76.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.3e-47 192.6 141 70.9
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 8.1e-46 188.0 134 70.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-45 187.6 158 63.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.5e-44 183.7 140 59.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 3.4e-44 182.6 192 56.8
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 3.8e-43 179.1 168 58.3
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 6.4e-43 178.3 145 57.2
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 6.4e-43 178.3 180 57.2
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.4e-43 178.3 182 52.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-42 177.6 209 48.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.2e-38 164.1 106 74.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.0e-37 159.1 97 79.4
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 4.0e-37 159.1 97 74.2
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-36 156.4 162 53.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 9.9e-36 154.5 148 48.6
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.4e-34 148.7 114 67.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.1e-30 136.7 132 46.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-28 131.0 101 66.3
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-27 125.9 101 64.4
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 8.4e-27 124.8 77 77.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.4e-26 123.2 103 63.1
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-26 123.2 77 76.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 9.3e-26 121.3 111 55.9
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.2e-25 120.9 74 77.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-25 120.2 99 61.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.5e-23 113.2 109 52.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-20 104.4 73 69.9
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.0e-20 103.6 72 75.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-20 103.2 127 43.3
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 3.3e-15 86.3 70 57.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 5.8e-12 75.5 104 42.3
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-11 74.7 52 69.2
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 6.5e-11 72.0 47 68.1
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-10 70.9 42 81.0
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-10 70.5 42 78.6
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 2.1e-09 67.0 125 40.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 1.1e-07 61.2 38 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 6.3e-06 55.5 92 37.0
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 6.3e-06 55.5 136 26.5


User provided reference genes

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