Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 1.3e-148 529.6 261 100.0
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 3.0e-68 262.7 202 69.3
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 1.3e-66 257.3 202 67.8
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 8.2e-66 254.6 202 68.3
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 2.4e-65 253.1 202 65.3
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 3.5e-48 196.1 157 66.9
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 7.7e-48 194.9 226 50.9
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 1.0e-47 194.5 204 52.0
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 2.2e-47 193.4 202 52.5
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.1e-46 191.0 202 52.0
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 1.9e-46 190.3 205 51.2
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 3.2e-46 189.5 202 49.5
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 3.2e-46 189.5 205 50.7
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 3.2e-46 189.5 206 52.9
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 9.4e-46 188.0 204 50.0
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 9.4e-46 188.0 204 49.5
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 6.8e-44 181.8 202 50.5
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 1.2e-43 181.0 204 47.5
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 2.0e-43 180.3 204 47.5
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 2.0e-43 180.3 221 47.1
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 2.6e-43 179.9 203 49.8
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 4.4e-43 179.1 246 44.7
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 7.5e-43 178.3 202 48.0
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 9.8e-43 177.9 202 48.0
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 2.2e-42 176.8 202 50.5
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 2.2e-42 176.8 207 48.8
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 2.2e-42 176.8 200 48.5
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 3.7e-42 176.0 207 48.8
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 4.9e-42 175.6 206 48.1
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 4.9e-42 175.6 207 48.8
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 4.9e-42 175.6 201 48.3
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 8.3e-42 174.9 220 46.4
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 8.3e-42 174.9 201 48.3
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 1.1e-41 174.5 200 49.0
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 1.1e-41 174.5 200 49.0
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 1.8e-41 173.7 206 49.5
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 2.4e-41 173.3 206 47.1
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 4.1e-41 172.6 205 47.3
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 5.4e-41 172.2 204 49.0
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 7.0e-41 171.8 202 47.5
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 7.0e-41 171.8 222 42.3
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 9.2e-41 171.4 206 47.1
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.6e-40 170.6 201 49.3
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.6e-40 170.6 201 49.3
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 2.7e-40 169.9 204 45.1
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 2.7e-40 169.9 203 45.3
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 4.5e-40 169.1 202 46.5
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 1.3e-39 167.5 205 46.3
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 1.3e-39 167.5 200 46.5
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 1.7e-39 167.2 203 45.3
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 2.3e-39 166.8 204 48.0
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 2.9e-39 166.4 200 46.5
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 2.9e-39 166.4 202 44.6
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 3.8e-39 166.0 205 45.4
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 8.6e-39 164.9 197 47.7
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 1.5e-38 164.1 203 45.3
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 1.9e-38 163.7 206 45.6
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 5.6e-38 162.2 200 46.0
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 7.3e-38 161.8 199 48.2
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 9.5e-38 161.4 246 41.9
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 9.5e-38 161.4 205 45.4
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 1.6e-37 160.6 201 46.3
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 2.8e-37 159.8 198 46.0
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 2.8e-37 159.8 173 49.7
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 1.0e-36 157.9 201 45.8
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 2.3e-36 156.8 202 43.1
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 2.3e-36 156.8 205 42.4
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 3.0e-36 156.4 205 45.4
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 8.9e-36 154.8 199 45.7
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 1.5e-35 154.1 199 43.7
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 1.5e-35 154.1 202 42.6
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 2.0e-35 153.7 199 45.7
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 4.4e-35 152.5 222 41.0
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 5.7e-35 152.1 200 45.5
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 5.7e-35 152.1 244 42.2
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 3.7e-34 149.4 205 43.9
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 6.4e-34 148.7 200 43.0
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 2.4e-33 146.7 172 49.4
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 3.2e-33 146.4 201 42.3
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 5.4e-33 145.6 205 44.4
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 7.0e-33 145.2 205 41.5
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 7.0e-33 145.2 200 43.0
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 1.2e-32 144.4 203 40.4
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 1.2e-32 144.4 199 43.7
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 1.6e-32 144.1 198 42.9
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 2.7e-32 143.3 203 39.9
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 1.0e-31 141.4 200 41.5
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 3.0e-31 139.8 198 39.4
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 3.9e-31 139.4 205 39.5
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 6.6e-31 138.7 205 42.4
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 1.1e-30 137.9 201 40.3
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 1.1e-30 137.9 201 40.3
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 1.1e-30 137.9 201 40.3
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 2.5e-30 136.7 201 39.3
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 3.3e-30 136.3 192 41.7
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 5.6e-30 135.6 194 40.7
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 1.6e-29 134.0 215 40.0
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 6.2e-29 132.1 194 40.7
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 6.2e-29 132.1 205 39.0
SMO140G0091 Selaginella moellendorffii HOM05D005594 ORTHO05D006403 8.0e-29 131.7 177 40.1
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 1.0e-28 131.3 205 40.0
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 2.3e-28 130.2 204 38.7
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 8.9e-28 128.3 206 39.3
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 1.2e-27 127.9 206 39.8
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 1.5e-27 127.5 200 38.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 8.3e-26 121.7 212 35.8
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 1.4e-25 120.9 224 34.4
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 3.2e-25 119.8 200 37.0
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.4e-25 119.0 198 38.4
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 5.4e-25 119.0 197 37.1
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 5.4e-25 119.0 198 38.4
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 9.2e-25 118.2 197 37.1
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 6.0e-24 115.5 209 36.4
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 6.0e-24 115.5 200 38.0
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 6.0e-24 115.5 200 36.0
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 2.3e-23 113.6 150 41.3
HanXRQChr13g0407601 Helianthus annuus HOM05D005594 ORTHO05D006403 7.3e-22 108.6 151 41.7
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 1.4e-20 104.4 180 37.8
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 4.0e-20 102.8 204 34.3
Aqoxy4G03010 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 6.8e-20 102.1 150 37.3
Lj4A740T30 Lonicera japonica HOM05D005594 ORTHO05D006403 5.8e-19 99.0 166 42.2
CAN.G375.34 Capsicum annuum HOM05D005594 ORTHO05D006403 6.4e-18 95.5 91 53.8
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 1.4e-17 94.4 247 30.4
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 4.1e-17 92.8 182 33.0
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 1.5e-14 84.3 202 30.7
HanXRQChr15g0472131 Helianthus annuus HOM05D005594 ORTHO05D006403 2.1e-13 80.5 113 39.8
HanXRQChr17g0561001 Helianthus annuus HOM05D005594 ORTHO05D006403 4.7e-13 79.3 114 40.4
Oeu034716.2 Olea europaea HOM05D005594 ORTHO05D006403 2.7e-08 63.5 93 37.6
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 4.6e-08 62.8 224 30.4
HPP92_001777 Vanilla planifolia HOM05D005594 ORTHO05D006403 6.0e-08 62.4 190 26.8
Zm00001eb306590 Zea mays HOM05D005594 ORTHO05D006403 3.0e-07 60.1 112 32.1
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 1.9e-06 57.4 242 27.3


User provided reference genes

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