Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 3630.5 1855 100.0
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 2994.5 1865 82.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 2983.4 1859 82.7
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 2950.6 1866 81.5
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2177.1 1868 61.1
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2134.0 1864 60.4
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2121.7 1862 59.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2114.3 1865 59.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2108.6 1865 59.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2097.0 1870 59.7
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2087.8 1864 59.5
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2069.3 1866 58.8
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2056.6 1866 58.1
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2030.4 1947 56.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2027.7 1866 58.0
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2017.7 1864 57.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1986.1 1862 56.3
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1981.1 1866 55.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1978.8 1866 55.9
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1977.2 1868 56.7
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1970.3 1864 56.3
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1951.0 1866 55.5
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1944.9 1865 55.0
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1866 55.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1931.8 1866 54.8
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1929.1 1866 55.7
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1910.2 1867 55.1
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1901.7 1858 54.6
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1894.4 1898 53.5
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1888.2 1993 52.2
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1885.9 1860 53.9
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1880.1 1877 53.7
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1872.1 1870 53.7
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1872.1 1863 53.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1869.0 1861 53.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1858.6 2009 51.1
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1853.6 1973 52.2
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1847.4 2050 50.1
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1832.4 1708 57.3
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1829.7 1868 53.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1800.4 1859 52.4
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1796.2 1871 51.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1795.8 1859 52.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1780.0 1714 55.5
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1772.3 1872 51.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1753.8 1882 50.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1861 51.3
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1863 51.6
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1867 51.6
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1867 51.6
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1867 51.6
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1747.6 1866 51.1
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1746.5 1881 51.1
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1743.8 1865 51.2
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1743.4 1865 51.2
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1734.5 1864 50.8
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1728.4 1861 50.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1723.8 1868 50.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1722.6 1867 51.0
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1699.1 1875 49.3
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1699.1 1731 52.7
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1688.7 1871 50.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1687.9 1882 49.8
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1684.8 1864 49.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1659.0 1872 48.9
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1511 57.9
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1642.5 1504 57.4
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1637.5 1855 49.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1586.2 1702 50.9
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1583.5 1658 51.6
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1579.7 1458 57.3
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1567.0 1855 48.6
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1559.7 1890 46.8
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1558.9 1970 45.9
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1478.8 1871 45.3
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1478.8 1890 46.2
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1476.1 1865 45.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1470.3 1928 43.9
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1401.7 1883 44.0
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1337.8 1361 52.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1303.9 1909 42.2
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1286.2 2073 39.4
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1280.4 1386 51.4
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1275.4 1359 50.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1245.7 1220 53.8
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1231.9 1300 51.9
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1191.4 1875 39.5
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1140.2 1868 39.2
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1107.8 1193 52.0
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 8.4e-290 1001.5 974 55.2
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.7e-256 890.2 834 57.1
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.7e-256 890.2 1037 46.9
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 3.0e-239 833.6 944 49.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 4.3e-233 813.1 1958 31.6
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-219 767.7 645 61.2
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.0e-210 738.8 726 55.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.0e-210 737.3 644 59.2
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 1.6e-200 704.9 944 45.6
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.4e-196 691.0 859 47.7
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 8.4e-189 666.0 831 46.6
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.7e-186 656.4 613 54.3
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.4e-183 647.9 642 52.0
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.9e-177 628.2 1839 28.7
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.9e-172 611.7 789 44.2
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.5e-165 586.3 593 53.5
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.2e-163 582.4 727 45.5
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.6e-161 574.7 530 57.7
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.5e-149 533.5 530 51.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 4.3e-124 451.1 410 57.3
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-120 439.1 437 50.3
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.6e-118 432.6 432 55.6
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 7.8e-118 430.3 426 53.1
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.3e-114 418.7 642 40.8
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.3e-108 397.9 375 54.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 4.0e-106 391.3 460 48.5
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.6e-102 379.4 347 57.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 3.8e-96 358.2 434 47.5
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.9e-96 357.8 343 54.5
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.7e-94 352.1 355 51.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.2e-88 332.4 401 49.9
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.2e-87 328.6 337 49.6
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.4e-74 285.8 446 38.3
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.4e-71 275.8 1171 25.4
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 3.2e-71 275.4 331 46.2
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 9.3e-71 273.9 629 32.3
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.8e-67 262.3 281 51.6
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-67 261.9 210 62.9
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 4.9e-64 251.5 546 33.9
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.6e-62 246.5 259 51.4
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.3e-61 243.4 275 47.3
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 3.3e-60 238.8 193 63.2
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 6.9e-58 231.1 226 54.4
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-48 199.5 188 53.2
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-47 196.8 147 67.3
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.4e-47 194.1 213 49.8
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.3e-45 189.5 161 56.5
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.6e-44 186.0 282 42.2
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.8e-43 182.6 268 42.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.9e-40 172.6 201 47.3
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.1e-39 170.6 132 65.2
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 5.5e-39 168.3 818 25.6
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.0e-37 162.5 217 45.6
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.7e-37 161.4 131 61.8
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 6.3e-35 154.8 140 61.4
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.1e-34 152.5 135 60.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.0e-33 149.8 128 54.7
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.9e-33 148.3 180 43.9
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.2e-32 146.4 155 49.0
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 2.9e-32 146.0 179 42.5
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 5.0e-32 145.2 199 43.7
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.5e-32 144.8 138 55.1
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.9e-31 143.3 224 41.1
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 5.2e-29 135.2 149 54.4
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.6e-28 132.9 122 52.5
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 5.0e-24 118.6 90 63.3
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-21 110.5 104 56.7
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.7e-19 102.4 110 46.4
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 4.8e-19 102.1 101 50.5
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 6.3e-19 101.7 184 35.3
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-17 97.4 81 58.0
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-15 90.9 93 49.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 3.6e-14 85.9 127 42.5
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 4.7e-14 85.5 53 79.2
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 2.0e-12 80.1 123 36.6
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 7.5e-12 78.2 52 75.0
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 9.8e-12 77.8 88 52.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 5.4e-10 72.0 131 35.1
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.7e-09 69.7 133 32.3
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 7.8e-09 68.2 81 48.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.9e-08 66.2 51 56.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.9e-08 66.2 51 56.9
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 8.6e-08 64.7 75 50.7
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.1e-06 58.5 114 31.6


User provided reference genes

Program Settings