Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 3.2e-259 898.3 584 100.0
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 1.3e-191 673.7 589 80.8
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 1.1e-187 660.6 589 79.6
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 2.1e-186 656.4 583 79.8
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 7.1e-110 402.1 561 48.7
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 1.2e-109 401.4 564 61.5
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 6.0e-109 399.1 580 60.3
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 3.7e-106 389.8 559 60.8
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 1.0e-103 381.7 578 59.0
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 2.2e-103 380.6 566 59.5
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 3.8e-103 379.8 561 59.7
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 5.0e-103 379.4 562 60.1
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 1.4e-102 377.9 552 60.1
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 2.7e-101 373.6 580 48.4
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 6.1e-101 372.5 566 59.2
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 3.3e-99 366.7 577 52.0
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 9.7e-99 365.2 552 58.3
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 9.7e-99 365.2 582 45.7
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 5.3e-97 359.4 553 50.5
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 5.3e-97 359.4 592 55.2
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 9.0e-97 358.6 554 59.0
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 2.0e-96 357.5 559 51.7
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 2.0e-96 357.5 535 61.1
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 2.6e-96 357.1 574 49.5
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 3.4e-96 356.7 517 54.5
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 7.7e-96 355.5 554 58.5
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.7e-95 354.4 587 56.9
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 2.2e-95 354.0 554 57.8
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 5.0e-95 352.8 569 55.7
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 1.9e-94 350.9 572 57.0
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 1.6e-93 347.8 557 57.3
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 2.1e-93 347.4 515 60.8
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 2.7e-93 347.1 559 59.0
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 6.1e-93 345.9 562 56.0
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 6.7e-92 342.4 555 58.0
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 8.8e-92 342.0 578 57.6
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.1e-91 341.7 556 57.2
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 1.1e-91 341.7 539 51.0
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 1.5e-91 341.3 560 57.9
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 2.5e-91 340.5 514 61.3
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 7.4e-91 339.0 558 56.8
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 8.2e-90 335.5 551 57.5
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 1.5e-88 331.3 566 46.8
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 4.5e-88 329.7 530 57.9
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 2.2e-87 327.4 579 55.6
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 5.0e-87 326.2 527 55.2
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 6.5e-87 325.9 556 54.0
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 6.5e-87 325.9 558 56.1
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 8.5e-87 325.5 579 54.1
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 3.2e-86 323.6 554 56.1
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 9.4e-86 322.0 556 54.9
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 9.4e-86 322.0 554 55.8
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 1.2e-85 321.6 574 53.5
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 1.2e-85 321.6 579 54.6
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 1.6e-85 321.2 554 54.2
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 2.1e-85 320.9 577 52.9
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 2.7e-85 320.5 562 56.4
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 6.1e-85 319.3 574 52.4
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 7.9e-85 318.9 574 52.8
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 7.9e-85 318.9 580 53.1
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 3.0e-84 317.0 583 54.2
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 4.4e-83 313.2 514 57.2
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 2.0e-80 304.3 551 54.4
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 2.0e-80 304.3 555 54.4
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 5.9e-80 302.8 527 57.1
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 3.2e-78 297.0 555 53.3
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 2.1e-77 294.3 555 53.3
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 2.7e-77 293.9 501 57.5
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 7.5e-75 285.8 585 52.0
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 2.4e-73 280.8 552 54.3
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 4.1e-73 280.0 570 52.5
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.6e-72 277.3 513 55.6
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 2.9e-71 273.9 580 51.2
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 6.5e-71 272.7 469 60.1
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 7.2e-70 269.2 552 52.0
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 6.3e-66 256.1 564 49.8
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 2.2e-63 247.7 475 48.4
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 7.2e-54 216.1 303 40.3
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 9.5e-54 215.7 280 40.7
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.0e-52 212.2 396 62.6
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.5e-51 208.4 267 41.6
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 3.7e-50 203.8 294 38.4
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 3.5e-48 197.2 227 45.8
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 6.6e-47 193.0 285 37.5
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 1.1e-46 192.2 419 32.9
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 7.5e-43 179.5 534 39.0
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 6.0e-40 169.9 517 39.3
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 1.1e-38 165.6 276 34.4
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 7.3e-38 162.9 129 60.5
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 1.8e-36 158.3 421 33.7
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.5e-35 155.2 161 51.6
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 3.4e-35 154.1 106 59.4
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 1.1e-30 139.0 227 34.8
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 1.5e-30 138.7 132 53.0
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 2.2e-26 124.8 189 34.9
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 6.0e-24 116.7 166 38.0
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 1.9e-17 95.1 135 40.7
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 9.6e-14 82.8 132 33.3
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 1.5e-11 75.5 107 36.4
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 7.6e-11 73.2 65 58.5
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 1.3e-10 72.4 94 39.4
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 3.8e-10 70.9 88 42.0
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 3.8e-10 70.9 97 39.2
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 4.9e-10 70.5 138 31.9
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 2.4e-09 68.2 117 38.5
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 5.4e-09 67.0 152 31.6
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 5.4e-09 67.0 116 36.2
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.6e-08 65.5 97 37.1
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 2.1e-08 65.1 93 38.7
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 3.5e-08 64.3 99 38.4
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 3.5e-08 64.3 93 35.5
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 3.5e-08 64.3 89 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2469 Anthoceros agrestis HOM05D004079 ORTHO05D005437 4.6e-08 63.9 75 38.7
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 6.0e-08 63.5 93 36.6
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 1.7e-07 62.0 93 36.6
PGR044G0186 Punica granatum HOM05D004079 ORTHO05D005437 2.3e-07 61.6 97 35.1
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 5.1e-07 60.5 116 30.2
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 5.1e-07 60.5 97 35.1
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 8.7e-07 59.7 94 30.9
Mapoly0026s0069 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.9e-06 58.5 94 28.7
TPR.G11874 Trifolium pratense HOM05D004079 ORTHO05D005437 1.9e-06 58.5 96 36.5
Os12g0638900 Oryza sativa ssp. japonica HOM05D004079 ORTHO05D005437 2.5e-06 58.2 89 33.7
Zm00001eb033110 Zea mays HOM05D004079 ORTHO05D005437 2.5e-06 58.2 95 32.6
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 5.6e-06 57.0 89 33.7
ATR0661G551 Amborella trichopoda HOM05D004079 ORTHO05D005437 5.6e-06 57.0 95 34.7
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 5.6e-06 57.0 103 35.0
AagrBONN_evm.TU.Sc2ySwM_117.3400 Anthoceros agrestis HOM05D004079 ORTHO05D005437 7.4e-06 56.6 90 30.0
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 9.6e-06 56.2 89 33.7
Pp3c5_26320 Physcomitrium patens HOM05D000424 ORTHO05D000355 9.6e-06 56.2 110 26.4


User provided reference genes

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