Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 3.3e-83 311.6 154 100.0
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.4e-52 209.9 130 79.2
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.4e-49 199.1 163 66.9
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 7.5e-43 177.6 132 65.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 4.9e-42 174.9 145 64.8
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 6.4e-42 174.5 140 65.7
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.1e-41 173.7 141 66.7
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.1e-41 173.7 102 79.4
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.1e-41 173.7 111 73.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.4e-41 172.6 111 72.1
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.2e-41 172.2 148 61.5
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 3.2e-41 172.2 142 62.0
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.1e-41 171.8 138 64.5
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 5.4e-41 171.4 111 72.1
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 9.2e-41 170.6 106 75.5
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 2.1e-40 169.5 136 64.7
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.1e-40 169.5 146 63.0
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.1e-40 169.5 148 61.5
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.7e-40 169.1 105 77.1
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 4.6e-40 168.3 119 70.6
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 6.0e-40 167.9 136 64.0
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 6.0e-40 167.9 136 64.0
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 6.0e-40 167.9 136 64.0
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 6.0e-40 167.9 105 76.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 7.8e-40 167.5 105 76.2
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.0e-39 167.2 151 58.9
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.3e-39 166.8 104 74.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.3e-39 166.8 138 63.8
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.3e-39 166.0 156 60.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 3.0e-39 165.6 154 59.7
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.9e-39 165.2 107 72.9
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 5.1e-39 164.9 134 64.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 6.6e-39 164.5 109 73.4
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 6.6e-39 164.5 143 62.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 8.6e-39 164.1 143 64.3
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.1e-38 163.7 159 54.7
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.1e-38 163.7 127 63.8
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.1e-38 163.7 141 64.5
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.9e-38 162.9 148 63.5
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.9e-38 162.9 76 96.1
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.9e-38 162.9 149 60.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 2.5e-38 162.5 136 63.2
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 2.5e-38 162.5 136 63.2
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.5e-38 162.5 105 70.5
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.3e-38 161.8 107 71.0
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 5.6e-38 161.4 135 60.7
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 5.6e-38 161.4 102 72.5
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 7.3e-38 161.0 110 73.6
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 9.5e-38 160.6 129 66.7
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 9.5e-38 160.6 158 55.7
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.2e-37 160.2 150 59.3
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.2e-37 160.2 92 77.2
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-37 159.8 104 71.2
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.8e-37 159.1 103 71.8
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 2.8e-37 159.1 132 62.9
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.8e-37 159.1 112 72.3
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 3.6e-37 158.7 131 63.4
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.7e-37 158.3 131 64.9
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 4.7e-37 158.3 146 57.5
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.1e-36 157.1 149 61.1
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.4e-36 156.8 114 70.2
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.4e-36 156.8 137 60.6
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.4e-36 156.8 130 63.1
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.8e-36 156.4 108 70.4
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 5.2e-36 154.8 163 55.2
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 8.9e-36 154.1 141 58.2
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.5e-35 153.3 135 68.9
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.5e-35 153.3 146 55.5
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.0e-35 152.9 137 67.9
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.0e-35 152.9 137 67.9
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.0e-35 152.9 137 67.9
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 2.6e-35 152.5 107 69.2
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 7.6e-35 151.0 86 77.9
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 7.6e-35 151.0 141 56.7
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 9.9e-35 150.6 97 74.2
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.7e-34 149.8 130 56.9
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.2e-34 149.4 102 72.5
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 2.9e-34 149.1 111 63.1
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 6.4e-34 147.9 102 70.6
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 6.4e-34 147.9 78 84.6
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 8.4e-34 147.5 103 68.9
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.1e-33 147.1 79 82.3
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.4e-33 146.7 104 70.2
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.4e-33 146.0 103 68.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 4.1e-33 145.2 102 68.6
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 5.4e-33 144.8 129 60.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.2e-32 143.7 99 62.6
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.6e-32 143.3 105 67.6
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 2.1e-32 142.9 111 61.3
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.5e-32 142.1 140 57.9
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 7.8e-32 141.0 110 62.7
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.0e-31 140.6 132 56.8
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 3.0e-31 139.0 130 56.2
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 5.1e-31 138.3 70 82.9
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.1e-30 137.1 71 81.7
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 3.3e-30 135.6 94 67.0
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 9.6e-30 134.0 71 78.9
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 3.1e-28 129.0 125 57.6
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.6e-27 125.9 106 63.2
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 9.9e-27 124.0 111 56.8
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.9e-26 121.7 123 57.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.4e-25 120.2 102 56.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.6e-24 116.7 108 57.4
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.6e-24 115.2 103 55.3
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.9e-22 109.8 88 63.6
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.3e-21 107.1 72 59.7
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.6e-21 106.7 84 67.9
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.1e-21 106.3 72 73.6
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 6.2e-21 104.8 109 47.7
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.1e-20 104.0 46 95.7
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.2e-19 100.5 46 91.3
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 3.4e-19 99.0 67 70.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.4e-19 99.0 98 48.0
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 9.9e-19 97.4 76 64.5
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.9e-17 93.2 67 55.2
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.6e-11 72.8 92 50.0
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 9.9e-11 70.9 41 78.0
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.8e-10 68.9 87 42.5
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 4.9e-10 68.6 69 56.5
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 4.9e-10 68.6 69 56.5
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 1.6e-08 63.5 110 42.7
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.0e-07 60.8 54 61.1
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 3.0e-07 59.3 25 96.0
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 5.1e-07 58.5 69 52.2
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 5.1e-07 58.5 24 95.8
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 8.7e-07 57.8 59 54.2
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.5e-06 57.0 80 43.8


User provided reference genes

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