Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 7.6e-77 290.4 146 100.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.5e-72 275.4 145 93.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.3e-72 274.6 145 93.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 5.6e-72 274.2 145 93.8
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 5.6e-72 274.2 145 94.5
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-71 272.3 145 91.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-71 272.3 145 91.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.7e-71 271.2 145 92.4
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-70 269.6 145 91.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-70 269.6 145 91.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.4e-70 268.9 145 90.3
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.4e-70 268.9 145 90.3
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.4e-70 268.9 145 90.3
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 3.1e-70 268.5 145 90.3
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.1e-70 268.5 145 91.0
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 5.2e-70 267.7 145 91.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 9.0e-70 266.9 145 89.7
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.2e-69 266.5 145 88.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.5e-69 266.2 145 89.7
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.0e-69 265.8 145 89.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.6e-69 265.4 145 89.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.6e-69 265.4 145 89.0
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.6e-69 265.4 145 89.7
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.6e-69 265.4 145 89.7
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.4e-69 265.0 145 90.3
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 4.4e-69 264.6 145 89.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.4e-69 264.6 145 89.7
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 5.8e-69 264.2 145 89.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 5.8e-69 264.2 145 88.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 5.8e-69 264.2 145 89.0
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 9.9e-69 263.5 145 88.3
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.3e-68 263.1 145 88.3
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.7e-68 262.7 145 88.3
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.7e-68 262.7 144 88.2
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.7e-68 262.7 145 88.3
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.2e-68 262.3 145 88.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.9e-68 261.9 145 89.0
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.9e-68 261.9 145 87.6
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.8e-68 261.5 144 88.2
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 3.8e-68 261.5 145 86.2
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 4.9e-68 261.2 145 86.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.4e-68 260.8 145 87.6
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.1e-67 260.0 145 86.2
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.1e-67 260.0 145 88.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-67 259.6 145 85.5
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.4e-67 259.6 145 86.9
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.4e-67 259.6 143 86.7
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.9e-67 259.2 146 85.6
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 2.4e-67 258.8 145 85.5
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 3.2e-67 258.5 145 86.9
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 3.2e-67 258.5 138 92.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.2e-67 258.5 145 84.8
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.2e-67 258.1 145 86.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 4.2e-67 258.1 145 84.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 5.4e-67 257.7 145 86.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 5.4e-67 257.7 168 79.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.4e-67 257.7 144 88.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.1e-67 257.3 145 86.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 9.3e-67 256.9 145 86.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 9.3e-67 256.9 137 91.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 9.3e-67 256.9 144 84.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-66 256.5 145 86.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-66 256.1 143 88.1
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.6e-66 256.1 145 86.9
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.6e-66 256.1 143 86.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 2.7e-66 255.4 145 86.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.7e-66 255.4 145 85.5
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.6e-66 254.6 145 85.5
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.6e-66 254.6 143 86.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 6.0e-66 254.2 137 91.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 7.8e-66 253.8 145 84.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 7.8e-66 253.8 145 85.5
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.0e-65 253.4 145 84.1
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.3e-65 253.1 143 86.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.3e-65 253.1 143 86.7
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.3e-65 253.1 137 89.8
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.7e-65 252.7 137 90.5
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.7e-65 252.7 145 84.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.3e-65 252.3 145 84.8
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 3.0e-65 251.9 137 90.5
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.0e-65 251.9 145 85.5
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 3.9e-65 251.5 145 82.1
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.1e-65 251.1 145 84.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.1e-65 251.1 145 84.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 6.6e-65 250.8 145 84.1
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 8.7e-65 250.4 145 86.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.7e-65 250.4 145 84.1
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 8.7e-65 250.4 137 89.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.1e-64 250.0 145 84.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.1e-64 250.0 145 84.1
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.5e-64 249.6 145 84.1
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.5e-64 248.8 138 85.5
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 7.3e-64 247.3 137 87.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-63 246.1 145 82.1
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 2.1e-63 245.7 145 82.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.6e-63 245.0 145 81.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 4.8e-63 244.6 145 82.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 6.2e-63 244.2 137 86.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 8.1e-63 243.8 137 86.9
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 8.1e-63 243.8 137 86.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.8e-62 242.7 157 77.1
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.0e-62 241.5 137 87.6
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 9.0e-62 240.4 145 80.0
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.0e-62 240.4 145 80.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 9.0e-62 240.4 145 80.7
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.2e-61 240.0 145 80.0
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-61 239.2 145 80.7
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-60 236.1 145 79.3
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.1e-59 233.4 137 81.8
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.4e-59 232.3 145 78.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.6e-58 229.6 146 78.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.7e-58 228.8 143 76.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-57 225.7 145 76.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.3e-55 219.9 135 82.2
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.8e-55 218.0 143 74.8
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.2e-53 213.4 155 71.6
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.9e-52 208.8 142 76.1
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.6e-50 201.4 145 72.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.3e-49 199.9 109 91.7
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-48 196.4 117 86.3
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 9.6e-48 193.7 110 83.6
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.6e-47 193.0 135 65.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-46 190.3 117 79.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.4e-45 185.3 145 59.3
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.2e-42 176.8 130 68.5
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-40 169.9 127 69.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.4e-38 162.5 101 78.2
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 4.1e-38 161.8 111 72.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.0e-37 159.5 99 78.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 3.8e-36 155.2 134 54.5
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-35 152.5 77 92.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 9.4e-35 150.6 119 66.4
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-34 149.8 119 66.4
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-34 149.8 96 77.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-30 137.1 77 81.8
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.1e-30 135.2 93 71.0
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.1e-30 135.2 68 91.2
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.3e-30 134.8 77 84.4
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-28 127.9 131 54.2
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 4.7e-26 121.7 95 65.3
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.9e-25 118.6 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.7e-23 113.2 64 90.6
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.0e-21 106.3 154 44.8
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.7e-20 103.2 77 67.5
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 4.2e-19 98.6 52 90.4
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.8e-17 93.2 66 68.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 7.4e-16 87.8 50 86.0
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 6.3e-15 84.7 58 65.5
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.4e-14 83.6 58 70.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 8.2e-07 57.8 33 81.8


User provided reference genes

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