Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 0.0e+00 1177.9 590 100.0
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 7.1e-283 976.9 575 86.1
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 4.2e-267 924.5 560 83.8
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 4.6e-258 894.4 574 81.2
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 2.2e-220 769.2 575 67.1
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 7.2e-219 764.2 580 67.1
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 7.2e-219 764.2 581 67.3
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 6.1e-218 761.1 573 66.0
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.4e-217 760.0 576 67.7
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.4e-217 760.0 581 67.5
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 2.2e-207 726.1 585 64.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 3.7e-207 725.3 572 64.9
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 6.3e-207 724.5 583 64.8
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 3.1e-206 722.2 578 64.2
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 5.4e-206 721.5 586 64.2
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 9.2e-206 720.7 539 67.7
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.2e-205 720.3 573 65.6
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 7.7e-205 717.6 586 64.7
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.8e-204 715.3 580 64.1
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.8e-204 715.3 575 64.0
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.9e-203 713.0 570 64.6
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.3e-203 711.8 570 64.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 5.6e-203 711.4 570 64.4
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 8.0e-202 707.6 571 61.3
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 6.8e-201 704.5 571 61.5
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 2.0e-200 703.0 576 60.9
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.2e-199 699.5 574 61.8
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 7.0e-198 694.5 584 61.5
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.6e-197 693.3 574 62.2
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 4.6e-197 691.8 583 62.4
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 7.8e-197 691.0 556 64.4
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.0e-196 690.6 556 61.5
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 5.0e-196 688.3 569 60.6
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.1e-195 687.2 568 61.6
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.5e-195 686.8 574 62.7
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.5e-195 686.0 576 61.6
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 3.3e-195 685.6 553 62.6
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.3e-195 685.6 553 64.9
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 4.3e-195 685.3 574 62.2
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 7.3e-195 684.5 549 62.7
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.2e-194 683.7 569 60.1
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 3.6e-194 682.2 576 61.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 8.0e-194 681.0 572 62.2
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 5.2e-193 678.3 577 60.1
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 8.9e-193 677.6 569 59.9
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.2e-192 677.2 584 62.2
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.6e-192 676.0 583 61.9
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 3.4e-192 675.6 558 62.0
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 4.4e-192 675.2 573 60.7
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 5.8e-192 674.9 583 60.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 7.5e-192 674.5 553 62.2
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.3e-191 673.7 571 60.2
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.7e-191 673.3 581 61.6
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 2.9e-191 672.5 580 59.7
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 3.7e-191 672.2 587 58.1
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.4e-191 671.4 581 59.2
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 6.4e-191 671.4 581 59.6
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 6.4e-191 671.4 580 60.9
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 8.3e-191 671.0 558 61.5
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.1e-190 670.6 558 62.0
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.1e-190 670.6 577 59.4
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.4e-190 670.2 499 67.7
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 1.4e-190 670.2 556 63.7
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 2.4e-190 669.5 580 60.9
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 3.2e-190 669.1 562 61.9
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 4.1e-190 668.7 583 60.4
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 4.1e-190 668.7 583 61.6
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 5.4e-190 668.3 558 61.1
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 9.2e-190 667.5 577 59.3
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.0e-189 666.4 606 57.9
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 3.5e-189 665.6 557 61.9
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 4.6e-189 665.2 557 62.1
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 4.6e-189 665.2 541 62.7
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 5.0e-188 661.8 553 61.7
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 5.0e-188 661.8 578 58.8
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 3.3e-187 659.1 579 58.4
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 7.3e-187 657.9 569 59.1
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.8e-186 656.0 587 58.9
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.7e-186 655.2 553 61.7
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 4.7e-186 655.2 553 61.7
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 4.7e-186 655.2 571 58.7
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 6.2e-186 654.8 541 62.7
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.1e-185 654.1 553 60.6
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 3.4e-184 649.0 563 60.0
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-182 644.0 581 60.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.1e-182 644.0 608 56.7
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.6e-180 634.4 622 57.1
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 1.5e-179 633.6 557 58.0
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 5.2e-177 625.2 578 58.7
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.0e-176 623.2 580 56.6
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.8e-175 619.0 548 61.3
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.3e-171 605.5 562 56.8
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 4.2e-166 589.0 581 56.3
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-166 588.6 556 56.7
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.6e-165 587.0 569 55.9
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.7e-165 586.3 546 56.6
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 6.6e-164 581.6 580 51.2
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.5e-163 580.5 578 55.2
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 4.3e-163 578.9 562 54.6
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.5e-160 570.5 569 52.7
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 5.8e-160 568.5 445 64.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 7.6e-160 568.2 562 53.0
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 1.6e-157 560.5 582 52.9
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 2.1e-154 550.1 579 51.5
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 6.4e-151 538.5 549 51.7
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 9.6e-147 524.6 475 57.3
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 4.8e-146 522.3 562 50.5
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 5.3e-145 518.8 546 51.6
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-140 503.4 567 48.7
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 8.7e-140 501.5 441 59.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 9.0e-137 491.5 314 74.2
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 8.0e-109 398.7 590 41.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 3.1e-105 386.7 518 45.2
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.5e-102 377.1 591 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 7.0e-97 359.0 556 39.4
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.3e-95 354.0 556 37.9
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.6e-95 352.1 360 51.7
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-87 328.2 383 48.3
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 1.3e-87 328.2 236 65.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-84 318.5 397 46.3
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 8.3e-74 282.3 318 49.1
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.0e-63 247.3 419 35.3
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 6.8e-60 236.1 198 59.6
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-58 230.7 360 40.6
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 3.8e-58 230.3 205 56.6
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 6.0e-48 196.4 146 65.8
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.5e-35 155.2 205 44.9
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.6e-32 143.7 147 46.9
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.5e-27 127.1 264 35.2
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 9.7e-22 109.4 237 33.8
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.4e-20 105.5 309 28.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.5e-19 102.1 223 34.5
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 1.6e-16 92.0 398 23.9
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.7e-13 82.0 143 34.3
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 2.2e-13 81.6 103 50.5
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 2.4e-12 78.2 50 78.0
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 2.1e-08 65.1 53 62.3


User provided reference genes

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