Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.0e-81 306.6 144 100.0
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 5.2e-38 161.4 150 60.0
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 3.5e-26 122.1 143 54.5
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 3.3e-24 115.5 146 50.7
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.2e-20 102.8 165 40.0
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.2e-18 97.1 148 43.9
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 2.1e-18 96.3 168 40.5
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.0e-18 94.7 145 45.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 6.0e-18 94.7 145 42.1
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.8e-18 94.4 165 38.2
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.0e-17 94.0 153 43.1
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.3e-17 93.6 142 45.8
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.3e-17 93.6 144 44.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 2.3e-17 92.8 172 37.8
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.0e-17 92.4 172 39.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.1e-16 90.5 153 39.9
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.3e-16 89.0 169 38.5
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 4.3e-16 88.6 158 39.9
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 5.6e-16 88.2 148 38.5
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 5.6e-16 88.2 175 40.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 7.3e-16 87.8 117 44.4
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 9.6e-16 87.4 140 38.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.6e-15 86.7 136 40.4
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.1e-15 86.3 147 40.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.8e-15 85.1 148 39.2
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.2e-15 84.7 170 37.6
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.1e-14 84.0 139 42.4
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.8e-14 83.2 171 36.8
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.8e-14 83.2 152 38.8
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 4.0e-14 82.0 164 38.4
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.0e-14 82.0 171 36.3
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.0e-14 82.0 148 39.2
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 4.0e-14 82.0 140 37.9
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.3e-14 81.6 170 37.1
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 6.9e-14 81.3 156 41.0
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 6.9e-14 81.3 137 38.0
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 9.0e-14 80.9 102 43.1
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-13 80.5 146 39.7
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-13 80.5 151 39.1
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.2e-13 80.5 157 35.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.2e-13 80.5 148 36.5
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.5e-13 80.1 147 40.1
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-13 79.7 157 35.7
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 2.6e-13 79.3 138 39.1
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 4.5e-13 78.6 149 35.6
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.8e-13 78.2 173 34.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 5.8e-13 78.2 138 44.2
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.9e-13 77.4 157 35.0
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.9e-13 77.4 156 35.9
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.9e-13 77.4 156 35.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.3e-12 77.0 151 38.4
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 3.8e-12 75.5 168 33.9
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 3.8e-12 75.5 155 35.5
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.9e-12 75.1 172 36.6
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 6.4e-12 74.7 166 35.5
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 6.4e-12 74.7 145 40.0
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 6.4e-12 74.7 145 37.2
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 8.4e-12 74.3 141 36.2
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.4e-12 74.3 158 37.3
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.1e-11 73.9 142 35.9
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.4e-11 72.8 107 43.0
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.2e-11 72.4 142 35.9
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 4.2e-11 72.0 152 36.8
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 7.1e-11 71.2 109 43.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 9.3e-11 70.9 112 39.3
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-10 70.1 147 33.3
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.1e-10 69.7 145 33.8
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 6.0e-10 68.2 153 37.3
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 7.9e-10 67.8 140 36.4
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.0e-09 67.4 155 31.0
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.0e-09 67.4 142 36.6
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.8e-09 66.6 133 38.3
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.0e-09 65.9 154 35.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 3.9e-09 65.5 152 36.2
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 5.1e-09 65.1 105 37.1
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 5.1e-09 65.1 125 40.0
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 3.3e-08 62.4 145 33.8
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.6e-07 60.1 152 34.9
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 2.1e-07 59.7 138 36.2
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.8e-07 59.3 119 37.0
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.8e-07 59.3 115 35.7
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-07 58.9 157 29.9
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.7e-07 58.9 147 32.7
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.8e-07 58.5 150 30.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.2e-07 58.2 154 33.8
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 6.2e-07 58.2 110 33.6
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 8.1e-07 57.8 160 31.2
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.1e-07 57.8 104 33.7
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-06 57.4 104 33.7
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.1e-06 57.4 117 38.5
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.8e-06 56.6 186 28.5
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 1.8e-06 56.6 123 35.8
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.8e-06 56.6 134 35.8
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.8e-06 56.6 132 35.6
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 4.0e-06 55.5 166 31.9
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.0e-06 55.5 101 34.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.0e-06 55.5 143 30.1
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.9e-06 54.7 159 30.2
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 6.9e-06 54.7 130 34.6
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.9e-06 54.7 129 33.3
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.0e-06 54.3 157 30.6


User provided reference genes

Program Settings