Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 2.9e-154 548.9 355 100.0
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 8.4e-114 414.5 366 82.5
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 1.2e-112 410.6 368 81.5
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 1.7e-98 363.6 368 76.4
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 2.7e-75 286.6 356 64.3
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 1.0e-74 284.6 357 64.4
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.2e-74 283.5 357 66.7
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 2.5e-73 280.0 385 62.1
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 2.5e-73 280.0 355 62.3
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 5.5e-73 278.9 353 61.5
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 9.4e-73 278.1 355 59.2
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 1.2e-72 277.7 370 61.4
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 1.2e-72 277.7 361 60.7
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 2.1e-72 276.9 354 58.2
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 8.0e-72 275.0 359 51.0
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 4.4e-70 269.2 373 62.2
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 9.8e-70 268.1 360 62.5
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.3e-69 267.7 355 57.7
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 8.3e-69 265.0 360 62.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.4e-68 264.2 357 63.3
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 3.1e-68 263.1 354 63.3
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 3.1e-68 263.1 356 62.4
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 4.1e-68 262.7 365 56.2
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 1.6e-67 260.8 361 55.7
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 5.9e-67 258.8 353 59.2
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 1.7e-66 257.3 357 58.5
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 1.7e-66 257.3 365 52.9
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 2.9e-66 256.5 355 59.2
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 5.0e-66 255.8 357 57.7
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 1.5e-65 254.2 370 61.4
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 2.1e-64 250.4 355 49.3
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 2.8e-64 250.0 360 59.7
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 3.6e-64 249.6 360 58.9
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 6.1e-64 248.8 368 59.8
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 1.0e-63 248.1 378 57.1
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.0e-63 248.1 353 59.5
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.3e-63 246.9 368 57.9
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 3.0e-63 246.5 355 57.2
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 5.2e-63 245.7 352 60.8
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 5.7e-62 242.3 357 60.8
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 5.7e-62 242.3 353 59.8
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 5.7e-62 242.3 353 59.8
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 5.7e-62 242.3 353 59.5
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 9.8e-62 241.5 356 59.3
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 9.8e-62 241.5 367 58.9
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 9.8e-62 241.5 358 58.1
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 3.7e-61 239.6 355 60.6
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 4.9e-61 239.2 355 56.3
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 6.3e-61 238.8 355 59.4
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 1.4e-60 237.7 364 59.9
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 2.4e-60 236.9 370 52.4
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 3.2e-60 236.5 357 57.1
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.1e-60 236.1 363 53.4
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 5.4e-60 235.7 355 57.5
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 7.0e-60 235.3 351 59.5
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 9.2e-60 235.0 357 52.9
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.2e-59 234.6 352 60.2
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.6e-59 234.2 393 53.7
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.0e-59 233.8 357 55.7
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 2.7e-59 233.4 358 53.6
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.5e-59 232.6 352 59.9
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 4.5e-59 232.6 354 45.8
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 5.9e-59 232.3 356 54.5
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 7.8e-59 231.9 377 57.0
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 1.0e-58 231.5 371 53.9
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.0e-58 231.5 354 45.5
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 1.3e-58 231.1 365 57.5
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 1.3e-58 231.1 391 50.4
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 1.3e-58 231.1 358 55.9
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 2.3e-58 230.3 358 52.0
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 2.3e-58 230.3 358 52.0
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 1.9e-57 227.3 370 58.6
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 3.3e-57 226.5 360 53.6
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 8.0e-56 221.9 377 54.6
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 4.0e-55 219.5 369 44.4
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 1.2e-54 218.0 356 51.7
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 1.5e-54 217.6 382 56.8
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 2.0e-54 217.2 371 49.6
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 2.0e-54 217.2 378 53.4
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.9e-53 213.4 302 58.9
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 8.3e-53 211.8 373 57.1
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 1.6e-51 207.6 355 54.6
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 4.3e-49 199.5 354 48.9
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 5.8e-46 189.1 385 50.6
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 2.9e-45 186.8 366 49.5
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 6.4e-45 185.7 353 48.2
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 7.1e-44 182.2 355 43.1
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 1.2e-43 181.4 360 49.7
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 2.1e-43 180.6 343 53.1
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.6e-43 179.5 161 61.5
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 2.3e-42 177.2 396 49.0
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 5.1e-42 176.0 160 60.6
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 8.6e-42 175.3 355 40.8
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 4.3e-41 172.9 207 49.8
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 5.6e-41 172.6 271 61.6
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 5.4e-36 156.0 288 57.6
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 6.0e-35 152.5 140 55.0
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 4.3e-33 146.4 124 60.5
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.4e-31 140.6 260 53.8
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 2.9e-29 133.7 113 62.8
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 1.4e-28 131.3 499 32.9
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 6.0e-27 125.9 297 46.5
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 5.1e-26 122.9 120 55.8
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 6.6e-26 122.5 153 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 3.6e-24 116.7 389 34.7
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 3.8e-21 106.7 527 33.8
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 2.4e-20 104.0 199 36.2
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 9.3e-20 102.1 103 52.4
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 9.3e-20 102.1 93 61.3
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 1.2e-19 101.7 191 37.2
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 1.6e-19 101.3 87 72.4
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.9e-17 94.4 97 54.6
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.5e-17 94.0 79 69.6
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.3e-16 91.7 113 59.3
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.8e-16 90.5 78 69.2
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 1.8e-15 87.8 91 52.7
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-12 78.2 121 44.6
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 3.5e-11 73.6 99 48.5
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-10 72.0 81 53.1
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 3.0e-10 70.5 115 41.7
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.0e-10 70.5 104 43.3
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 1.1e-09 68.6 40 77.5
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 1.9e-09 67.8 107 42.1
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-09 67.4 75 54.7
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 4.3e-09 66.6 115 40.9
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 9.6e-09 65.5 70 55.7
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-07 62.0 108 43.5
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-07 60.8 102 45.1
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 3.1e-07 60.5 116 38.8
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 3.1e-07 60.5 105 42.9
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 4.0e-07 60.1 105 41.9
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.0e-07 60.1 92 46.7
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-07 59.3 102 43.1
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-07 59.3 102 43.1
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 1.2e-06 58.5 102 45.1
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-06 57.4 108 39.8
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-06 57.4 108 38.9
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.4e-06 57.0 102 41.2


User provided reference genes

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