Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 6.0e-121 437.6 228 100.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.4e-108 395.2 228 91.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.3e-107 393.3 228 89.5
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.1e-106 390.2 221 91.0
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 83.7
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 7.6e-100 367.5 228 83.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.8e-99 365.2 228 82.0
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 82.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 6.4e-99 364.4 228 82.0
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 8.4e-99 364.0 219 84.0
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.1e-98 363.6 228 82.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.1e-98 363.6 221 83.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.1e-98 363.6 228 82.0
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.4e-98 362.5 228 80.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.4e-98 362.5 228 81.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 7.1e-98 360.9 217 83.9
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 7.1e-98 360.9 228 80.3
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.3e-98 360.5 219 84.5
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.6e-97 359.8 228 80.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.1e-97 359.4 228 81.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.5e-97 358.6 228 80.3
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.5e-97 358.6 217 84.3
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 3.5e-97 358.6 231 80.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.5e-97 358.6 228 80.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.0e-97 357.8 216 84.7
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 6.0e-97 357.8 228 78.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 7.9e-97 357.5 221 81.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 7.9e-97 357.5 221 81.4
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.9e-97 357.5 221 81.9
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.0e-96 357.1 228 78.9
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 228 81.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.3e-96 356.7 217 83.4
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.3e-96 356.7 221 81.9
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.8e-96 356.3 217 82.9
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.8e-96 356.3 229 80.8
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.3e-96 355.9 221 81.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-96 355.9 228 79.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.0e-96 355.5 217 81.1
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.9e-96 355.1 219 82.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.1e-96 354.8 222 80.6
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 78.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 8.7e-96 354.0 229 81.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 8.7e-96 354.0 217 82.5
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.7e-96 354.0 223 80.3
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.1e-95 353.6 228 80.7
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.1e-95 353.6 229 82.1
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.5e-95 353.2 228 79.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-95 352.8 217 82.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.9e-95 352.8 217 81.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.9e-95 352.8 228 76.8
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.9e-95 352.8 221 80.1
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.5e-95 352.4 217 82.0
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.5e-95 352.4 221 80.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.5e-95 352.4 222 79.7
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.5e-95 352.4 221 81.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.5e-95 352.4 215 81.9
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.3e-95 352.1 228 78.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.3e-95 351.7 217 81.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 4.3e-95 351.7 228 78.1
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 7.4e-95 350.9 217 82.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 7.4e-95 350.9 217 82.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 7.4e-95 350.9 230 78.3
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 9.6e-95 350.5 222 79.3
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 9.6e-95 350.5 228 78.5
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 9.6e-95 350.5 228 78.1
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.3e-94 350.1 228 78.5
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.3e-94 350.1 229 81.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.6e-94 349.7 229 81.2
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.1e-94 349.4 217 81.6
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.8e-94 349.0 228 78.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.8e-94 349.0 216 81.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.7e-94 348.6 228 77.6
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 4.8e-94 348.2 215 81.4
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.2e-94 347.8 219 80.4
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 6.2e-94 347.8 228 78.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.2e-94 347.8 217 80.6
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.8e-93 346.3 217 80.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.8e-93 346.3 222 78.4
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 81.9
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 80.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.3e-93 344.7 219 79.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.3e-93 344.7 217 79.7
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.9e-93 344.4 228 75.9
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 6.9e-93 344.4 220 79.1
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.0e-92 342.8 234 75.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.0e-92 342.8 228 78.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.6e-92 342.4 218 79.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 2.6e-92 342.4 231 78.4
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.5e-92 341.7 228 77.2
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.7e-91 339.7 214 80.8
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.8e-91 338.6 206 81.1
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.9e-91 338.2 207 82.1
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 6.4e-91 337.8 228 77.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 8.4e-91 337.4 215 80.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 8.4e-91 337.4 228 75.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.5e-90 335.9 215 77.2
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.2e-90 335.5 206 81.6
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.2e-89 333.6 215 78.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.2e-89 333.6 208 80.3
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.6e-89 333.2 208 79.8
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.8e-88 329.7 215 79.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.0e-88 328.9 204 81.4
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.0e-88 328.9 204 80.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 5.1e-88 328.2 207 79.2
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 6.7e-88 327.8 204 81.4
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 6.7e-88 327.8 259 67.2
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.5e-87 325.9 226 75.2
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 4.3e-87 325.1 215 75.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.6e-86 323.2 205 77.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.4e-85 320.1 214 74.8
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.2e-84 317.0 227 73.1
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.2e-84 317.0 228 71.9
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.9e-83 312.4 212 73.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.2e-82 308.9 202 78.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-81 306.6 187 81.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.1e-81 306.2 191 82.2
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.9e-80 302.0 192 80.7
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.0e-76 289.7 214 67.3
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.0e-75 287.3 228 68.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.2e-74 282.0 185 76.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.2e-73 280.4 216 66.7
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.0e-72 275.8 183 78.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 2.5e-71 272.7 216 67.6
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 5.9e-68 261.5 163 79.8
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.6e-65 252.3 209 62.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.6e-65 252.3 192 70.8
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.6e-65 252.3 163 76.1
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 8.8e-64 247.7 230 60.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 2.0e-63 246.5 219 63.5
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.4e-61 239.6 159 74.2
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.3e-61 238.4 196 64.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.3e-61 238.4 160 73.8
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.3e-59 233.8 237 52.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.7e-57 226.1 154 73.4
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.0e-56 224.2 163 72.4
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 6.3e-54 214.9 215 53.5
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 1.0e-48 197.6 131 74.8
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 5.2e-48 195.3 193 57.0
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.2e-42 175.6 100 82.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.1e-37 159.5 102 80.4
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.2e-34 148.3 114 65.8
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.3e-27 127.5 105 61.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.3e-27 126.7 88 73.9
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.9e-27 126.3 109 61.5
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-26 124.4 114 63.2
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 3.4e-23 112.8 135 49.6
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.3e-18 96.3 51 90.2
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.7e-14 82.8 60 76.7
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 3.7e-14 82.8 63 65.1
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.8e-12 75.1 97 45.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.3e-11 73.6 206 29.1
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.9e-11 72.8 114 42.1
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.4e-08 64.3 63 57.1
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 3.1e-08 63.2 67 47.8
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 3.7e-06 56.2 146 28.1


User provided reference genes

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