Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 0.0e+00 2245.3 1129 100.0
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 0.0e+00 1328.5 1224 63.1
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 0.0e+00 1253.0 1157 61.8
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 0.0e+00 1247.3 1223 60.6
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 0.0e+00 1224.2 1221 60.9
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 9.5e-143 512.3 1338 32.7
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 3.1e-109 401.0 1326 30.5
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 3.4e-108 397.5 1294 31.3
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 7.3e-95 353.2 1290 29.1
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 9.6e-95 352.8 1299 29.6
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 1.3e-94 352.4 1334 28.8
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.1e-93 347.8 1293 29.3
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 3.4e-92 344.4 1292 28.8
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 2.9e-91 341.3 1020 31.6
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.4e-90 338.2 1315 27.7
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.3e-86 325.9 1285 28.9
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 4.6e-81 307.4 1248 28.5
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 3.7e-78 297.7 1315 27.5
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.2e-78 297.0 1274 27.4
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 9.0e-77 293.1 1166 29.1
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 4.5e-76 290.8 1276 28.1
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.8e-76 290.4 1276 28.3
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.3e-75 289.3 1339 27.3
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 5.0e-75 287.3 1294 28.1
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 7.1e-74 283.5 1021 29.3
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 8.7e-72 276.6 854 31.1
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.3e-70 272.7 1240 27.0
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.3e-67 262.7 1355 26.1
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 6.5e-67 260.4 1322 25.2
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.4e-66 259.2 1041 27.7
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.6e-65 254.6 1245 27.6
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.2e-59 235.3 1316 25.6
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 7.9e-57 226.9 969 28.7
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.0e-56 226.5 1006 28.8
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 2.0e-52 212.2 1200 26.1
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 4.5e-52 211.1 1248 25.1
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 5.2e-48 197.6 1051 25.6
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 4.4e-47 194.5 841 27.1
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.1e-45 189.9 1212 25.2
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.1e-45 188.0 969 25.8
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 4.5e-44 184.5 1046 25.3
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 4.5e-44 184.5 1238 24.0
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 5.5e-42 177.6 1234 25.2
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 9.4e-42 176.8 1310 23.7
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 4.4e-39 167.9 1269 24.1
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 8.3e-38 163.7 1256 24.8
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.8e-37 162.5 1230 25.4
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 3.1e-37 161.8 1247 25.2
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.3e-35 156.4 1167 24.9
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 5.0e-35 154.5 1248 24.4
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 1.4e-32 146.4 1084 23.7
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 1.2e-31 143.3 1246 23.6
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.6e-31 142.1 1244 24.5
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 9.8e-31 140.2 1239 24.1
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.9e-30 137.9 1278 23.2
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 3.5e-28 131.7 1338 22.9
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 5.9e-28 131.0 1112 24.0
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.1e-26 126.7 1299 22.7
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 8.9e-24 117.1 164 44.5
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 9.8e-23 113.6 142 46.5
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.2e-22 112.5 736 24.0
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.7e-22 111.7 1232 22.4
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 6.3e-22 110.9 1013 23.1
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 1.4e-21 109.8 1275 22.5
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 1.4e-21 109.8 1287 22.8
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.4e-21 109.0 1193 23.3
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 5.9e-20 104.4 1189 21.8
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 5.9e-20 104.4 976 23.7
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 2.3e-19 102.4 1362 22.9
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 3.9e-19 101.7 1234 22.7
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 6.6e-19 100.9 1188 22.3
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 2.5e-18 99.0 129 46.5
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.5e-18 99.0 1189 22.9
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 4.3e-18 98.2 1266 21.0
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 3.6e-17 95.1 1219 22.7
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 6.2e-17 94.4 148 41.9
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 1.8e-16 92.8 1199 21.6
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 2.3e-16 92.4 1045 23.8
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.1e-16 92.0 1287 22.9
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 4.4e-15 88.2 1291 23.2
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.4e-15 88.2 204 35.8
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 4.4e-15 88.2 684 23.5
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.3e-14 86.7 191 36.1
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.7e-14 86.3 320 30.0
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 8.3e-14 84.0 162 35.8
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 3.2e-13 82.0 136 36.0
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 5.4e-13 81.3 149 39.6
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 6.0e-12 77.8 653 23.4
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.3e-11 75.9 87 47.1
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 8.6e-11 73.9 70 45.7
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.3e-10 72.0 803 23.2
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 8.1e-09 67.4 86 46.5
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.1e-08 67.0 292 28.1
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.1e-08 67.0 107 39.3
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.1e-08 67.0 107 39.3
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.1e-08 67.0 120 35.8
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.1e-08 67.0 1063 21.1
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.4e-08 66.6 64 56.2
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 3.1e-08 65.5 254 29.5
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 6.8e-08 64.3 50 60.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 3.4e-07 62.0 80 46.2
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 4.4e-07 61.6 280 27.9
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 9.8e-07 60.5 60 46.7
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.7e-06 59.7 230 27.4
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 2.2e-06 59.3 49 59.2
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.9e-06 58.9 54 55.6
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 4.9e-06 58.2 182 30.2


User provided reference genes

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