Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 4.3e-104 381.3 194 100.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.5e-99 365.5 194 94.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.2e-99 365.2 194 93.8
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-92 342.4 194 89.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.4e-91 339.7 194 87.1
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.9e-91 339.3 194 88.7
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.2e-91 338.6 194 87.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 9.4e-91 337.0 194 88.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.4e-91 337.0 198 86.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.7e-90 335.5 194 87.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.6e-90 335.1 198 86.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.0e-89 332.0 194 86.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 5.1e-89 331.3 193 85.5
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.1e-89 331.3 198 84.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 85.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 86.6
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 83.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 86.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.0e-88 329.3 194 84.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.5e-88 328.9 194 86.1
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.3e-88 328.2 194 85.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 84.0
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.7e-88 327.8 197 84.8
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 9.7e-88 327.0 194 86.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 9.7e-88 327.0 201 84.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.3e-87 326.6 194 85.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 85.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 86.6
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 83.0
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 82.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 4.8e-87 324.7 194 86.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.8e-87 324.7 195 85.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 85.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-86 322.8 201 82.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-86 322.8 201 82.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 84.5
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 82.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 82.5
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 85.6
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.1e-86 320.5 194 83.0
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 81.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.5e-85 319.7 197 83.2
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.0e-85 319.3 201 81.1
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.0e-85 319.3 201 82.6
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.5
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 82.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 82.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 84.5
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.9e-85 317.8 195 84.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 84.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 199 81.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 7.7e-85 317.4 198 80.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 80.1
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 84.5
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.7e-84 316.2 194 82.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-84 315.5 194 82.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.8e-84 315.1 194 81.4
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 82.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 81.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.5e-84 314.3 198 81.3
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 199 79.4
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 197 80.2
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-83 313.2 192 81.2
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.0
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.9e-83 312.8 196 80.6
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.5e-83 312.4 193 82.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.2e-83 312.0 202 79.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.2e-83 312.0 198 81.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 5.5e-83 311.2 199 78.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 5.5e-83 311.2 199 78.9
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 206 77.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 82.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.2e-82 310.1 198 78.3
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-82 310.1 200 78.5
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 78.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 77.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 78.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.1e-82 309.3 194 81.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.6e-82 308.5 196 81.1
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.6e-82 308.5 194 80.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.6e-82 308.5 201 76.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.7e-82 308.1 194 80.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 80.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.0e-81 307.0 201 76.1
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.4e-81 306.6 203 75.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-81 306.2 210 75.7
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.3e-81 305.8 196 80.1
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.8e-81 303.9 217 73.7
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.1e-80 303.5 199 76.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 81.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-80 302.8 199 77.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.0e-80 302.8 199 77.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 4.4e-80 301.6 195 80.0
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.4e-80 301.6 204 74.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.7e-80 301.2 198 77.8
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 7.4e-80 300.8 199 76.4
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.3e-79 300.1 203 76.8
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.7e-79 299.7 196 76.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.8e-79 298.9 194 78.9
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-79 298.5 200 77.5
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.1e-78 297.0 200 77.0
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.4e-78 296.6 175 85.1
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.3e-78 294.7 199 74.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.3e-78 294.7 199 76.9
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.6e-77 292.4 186 80.6
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.5e-77 292.0 200 76.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.5e-77 291.6 176 84.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 5.9e-77 291.2 223 70.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 5.9e-77 291.2 243 67.1
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.3e-76 290.0 194 76.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.9e-76 288.9 198 73.7
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.5e-76 287.7 183 80.3
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 8.5e-76 287.3 198 75.8
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.2e-75 284.3 175 81.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.1e-74 282.7 192 70.8
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 8.0e-74 280.8 180 78.9
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 8.0e-74 280.8 183 79.2
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.0e-73 280.4 202 71.3
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.3e-73 279.3 200 69.5
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.3e-73 279.3 193 68.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.0e-73 278.9 200 69.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 4.0e-73 278.5 215 70.7
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 5.7e-72 274.6 211 68.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.7e-71 273.1 189 73.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.8e-71 272.3 201 71.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.3e-71 271.2 194 72.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.1e-70 270.4 205 71.7
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.8e-70 269.6 192 66.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.5e-69 265.4 213 67.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.9e-69 264.6 187 73.8
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-68 263.1 194 67.5
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.5e-68 260.8 185 68.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.6e-66 256.5 237 61.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.6e-66 256.5 183 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.5e-64 250.0 180 70.6
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.5e-64 250.0 198 63.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.6e-61 240.0 194 64.9
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 5.0e-60 235.0 175 70.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.5e-60 234.6 201 64.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 4.4e-56 221.9 153 74.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.0e-49 198.7 130 80.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.1e-46 190.7 116 81.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.8e-46 189.9 177 58.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.3e-43 177.9 98 92.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-42 177.2 99 93.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.4e-39 164.9 188 54.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.3e-39 164.5 99 85.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.0e-37 158.3 97 78.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.0e-36 155.2 79 91.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 7.8e-29 131.3 70 94.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.0e-28 131.0 97 72.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 3.9e-28 129.0 197 45.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.3e-27 125.6 70 77.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-25 120.9 98 65.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.2e-23 113.2 190 39.5
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 8.4e-23 111.3 99 63.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.9e-22 110.2 71 80.3
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 3.5e-21 105.9 193 38.3
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 8.6e-20 101.3 98 62.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.3e-19 99.4 65 76.9
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 4.7e-18 95.5 98 60.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.1e-17 92.8 70 64.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-16 90.9 62 69.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 7.1e-14 81.6 62 69.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 9.3e-14 81.3 175 36.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.7e-12 77.0 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.3e-12 76.6 53 73.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.3e-06 54.7 155 33.5


User provided reference genes

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