Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 8.7e-27 122.9 61 100.0
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 2.9e-22 107.8 59 86.4
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 2.7e-20 101.3 60 81.7
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 3.7e-17 90.9 56 76.8
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 6.3e-17 90.1 53 79.2
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 1.4e-16 89.0 58 75.9
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 1.8e-16 88.6 56 75.0
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.8e-16 88.6 59 72.9
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 4.1e-16 87.4 56 73.2
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 6.9e-16 86.7 59 67.8
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 1.2e-15 85.9 54 72.2
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 1.5e-15 85.5 51 78.4
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 1.5e-15 85.5 58 69.0
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 2.0e-15 85.1 58 69.0
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 2.0e-15 85.1 59 71.2
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 2.0e-15 85.1 58 69.0
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 2.0e-15 85.1 58 69.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.6e-15 84.7 59 67.8
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 3.4e-15 84.3 58 70.7
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 3.4e-15 84.3 59 71.2
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 3.4e-15 84.3 56 69.6
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 4.5e-15 84.0 51 76.5
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 4.5e-15 84.0 44 88.6
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 5.9e-15 83.6 56 71.4
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 5.9e-15 83.6 51 74.5
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 5.9e-15 83.6 56 67.9
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 5.9e-15 83.6 59 71.2
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 1.0e-14 82.8 59 67.8
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 1.3e-14 82.4 51 76.5
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 1.3e-14 82.4 47 78.7
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.7e-14 82.0 56 67.9
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 1.7e-14 82.0 56 67.9
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 1.7e-14 82.0 56 69.6
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.2e-14 81.6 56 67.9
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 2.9e-14 81.3 56 67.9
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 3.8e-14 80.9 59 64.4
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 5.0e-14 80.5 51 74.5
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 5.0e-14 80.5 51 74.5
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 5.0e-14 80.5 56 66.1
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 5.0e-14 80.5 59 64.4
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 6.5e-14 80.1 49 75.5
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 8.5e-14 79.7 50 76.0
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 1.1e-13 79.3 59 62.7
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 1.1e-13 79.3 60 65.0
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 1.4e-13 79.0 54 72.2
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 1.4e-13 79.0 47 74.5
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 2.5e-13 78.2 61 62.3
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 3.2e-13 77.8 58 69.0
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 5.5e-13 77.0 50 76.0
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 7.2e-13 76.6 58 65.5
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 9.4e-13 76.3 51 68.6
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 9.4e-13 76.3 56 58.9
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 2.1e-12 75.1 50 72.0
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 2.7e-12 74.7 57 66.7
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 2.7e-12 74.7 60 61.7
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 3.6e-12 74.3 43 79.1
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 6.1e-12 73.6 43 79.1
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 6.1e-12 73.6 61 63.9
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 7.9e-12 73.2 53 69.8
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 2.3e-11 71.6 50 72.0
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 2.3e-11 71.6 56 64.3
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 2.3e-11 71.6 43 81.4
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 3.0e-11 71.2 51 66.7
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 3.0e-11 71.2 51 68.6
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 3.9e-11 70.9 58 63.8
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 6.7e-11 70.1 42 78.6
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 8.8e-11 69.7 61 59.0
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 1.5e-10 68.9 58 60.3
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 1.5e-10 68.9 58 60.3
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 1.5e-10 68.9 58 60.3
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 1.5e-10 68.9 58 60.3
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 1.5e-10 68.9 58 60.3
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 1.5e-10 68.9 52 65.4
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 2.0e-10 68.6 47 70.2
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 4.4e-10 67.4 58 60.3
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 4.4e-10 67.4 58 60.3
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 4.4e-10 67.4 43 74.4
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 5.7e-10 67.0 45 64.4
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 7.4e-10 66.6 55 61.8
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 1.3e-09 65.9 58 56.9
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 1.3e-09 65.9 58 56.9
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 2.2e-09 65.1 51 66.7
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 1.1e-08 62.8 45 68.9
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 2.4e-08 61.6 48 62.5


User provided reference genes

Program Settings