Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 0.0e+00 2050.8 1121 100.0
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 0.0e+00 1571.2 1157 78.0
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 0.0e+00 1545.8 1139 78.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 0.0e+00 1532.3 1137 77.8
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 9.3e-276 954.1 1140 53.2
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 3.8e-269 932.2 1140 52.9
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 1.1e-260 904.0 1146 50.9
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 1.0e-253 880.9 1129 50.2
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 5.7e-249 865.1 1134 50.3
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 5.9e-246 855.1 1128 49.8
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 2.5e-244 849.7 1143 47.8
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 9.4e-244 847.8 1123 48.5
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 2.7e-243 846.3 1140 49.0
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.0e-243 844.7 1079 49.9
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.3e-242 843.2 1034 50.6
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 1.0e-237 827.8 1138 48.1
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.4e-234 817.4 1132 47.6
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 4.4e-233 812.4 1182 47.0
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 9.8e-233 811.2 1155 47.4
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 1.3e-232 810.8 1141 47.7
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 2.8e-232 809.7 1132 47.3
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 6.3e-232 808.5 1137 48.8
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 6.3e-232 808.5 1194 49.7
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 1.2e-230 804.3 1136 49.5
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.0e-230 803.5 1196 49.7
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 1.0e-229 801.2 1144 47.0
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.0e-225 786.9 1138 46.7
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 7.5e-225 785.0 1204 49.3
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 1.1e-223 781.2 1130 46.5
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.1e-223 781.2 1135 46.3
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 5.9e-222 775.4 1130 47.0
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 8.6e-221 771.5 1145 47.0
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 5.6e-220 768.8 1145 46.4
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 2.6e-217 760.0 1162 47.5
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 7.5e-217 758.4 1125 45.8
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 1.1e-215 754.6 1148 45.0
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 9.2e-215 751.5 1195 46.1
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 6.4e-208 728.8 1217 43.6
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 5.4e-207 725.7 1207 43.0
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 3.5e-206 723.0 1170 46.1
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 7.8e-198 695.3 1174 41.7
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 3.3e-196 689.9 872 49.8
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.2e-193 681.4 1197 44.5
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.2e-192 677.2 1151 42.7
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.1e-191 674.9 804 51.6
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 6.0e-190 669.1 703 55.9
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 1.1e-188 664.8 969 45.0
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 2.8e-187 660.2 1050 44.4
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 3.6e-187 659.8 823 49.9
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.1e-186 658.3 1182 44.9
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.4e-186 657.9 1162 41.6
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 5.3e-186 656.0 1171 44.4
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.0e-185 654.1 1137 43.7
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 1.3e-184 651.4 859 47.0
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 3.8e-184 649.8 1106 42.1
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 7.9e-182 642.1 927 46.5
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 1.8e-181 641.0 838 47.6
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 2.3e-181 640.6 1131 41.6
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 5.1e-181 639.4 1146 44.9
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 7.4e-180 635.6 1245 43.5
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 3.7e-179 633.3 1124 40.5
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 3.7e-179 633.3 861 47.6
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 8.1e-179 632.1 1099 41.0
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 2.0e-177 627.5 937 45.1
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 9.9e-177 625.2 1242 40.8
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 1.9e-175 620.9 799 49.9
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 9.3e-175 618.6 997 43.4
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 1.2e-174 618.2 821 48.0
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 1.4e-170 604.7 856 45.8
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.2e-169 601.7 891 45.1
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 2.6e-169 600.5 929 44.6
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 2.6e-169 600.5 921 45.5
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 1.3e-168 598.2 930 44.7
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 3.8e-168 596.7 937 44.7
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 3.8e-168 596.7 937 44.7
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 6.5e-168 595.9 854 45.4
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 6.0e-166 589.3 1186 37.6
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 1.3e-165 588.2 936 44.1
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 1.3e-165 588.2 936 44.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 7.4e-164 582.4 810 45.4
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 2.4e-162 577.4 849 44.1
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 4.1e-162 576.6 899 44.4
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 9.0e-162 575.5 1097 41.9
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 5.9e-161 572.8 1176 38.7
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 7.6e-161 572.4 858 45.3
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 6.5e-160 569.3 1137 39.1
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 8.5e-160 568.9 1090 41.7
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.0e-157 562.0 738 49.1
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 2.9e-152 543.9 604 54.0
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.1e-150 537.7 761 44.8
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 1.1e-146 525.4 893 41.2
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.4e-146 525.0 1122 37.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.0e-144 518.8 1276 34.2
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 1.9e-143 514.6 600 52.0
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 6.1e-142 509.6 899 41.4
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 1.0e-136 492.3 827 47.8
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 7.5e-132 476.1 817 40.8
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 9.7e-132 475.7 781 42.5
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 1.6e-129 468.4 827 40.7
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 1.9e-127 461.5 802 43.0
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.0e-117 427.2 469 53.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 8.9e-117 426.0 681 43.2
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 1.5e-111 408.7 514 47.7
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 9.5e-103 379.4 955 34.5
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 1.8e-101 375.2 509 45.8
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 4.0e-85 320.9 322 54.7
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 8.4e-83 313.2 338 64.2
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.2e-74 284.3 398 47.0
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 1.1e-69 269.6 339 46.3
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.8e-62 245.0 355 45.6
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 2.8e-62 245.0 201 62.7
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 2.1e-57 228.8 547 38.0
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 1.7e-51 209.1 525 36.0
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 6.5e-51 207.2 168 67.9
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.2e-49 203.0 529 35.2
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 6.7e-40 170.6 568 28.3
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 3.4e-36 158.3 221 47.1
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 4.5e-36 157.9 336 32.4
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 8.5e-35 153.7 181 50.3
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.8e-27 128.3 178 43.8
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.0e-24 118.6 112 56.2
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 2.2e-19 102.4 327 30.0
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 2.9e-19 102.1 260 28.5
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 8.5e-19 100.5 74 63.5
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 9.4e-18 97.1 76 67.1
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.7e-17 95.5 80 57.5
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.7e-14 86.3 65 61.5
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 6.3e-14 84.3 52 78.8
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 9.1e-13 80.5 70 55.7
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.0e-11 77.0 207 30.9
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.5e-10 73.2 69 49.3
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 5.5e-10 71.2 178 31.5
arahy.Tifrunner.gnm1.ann1.6G1AZV Arachis hypogaea HOM05D002567 ORTHO05D006538 7.2e-10 70.9 338 30.5
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 6.1e-09 67.8 72 45.8
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 8.0e-09 67.4 98 50.0
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 3.0e-08 65.5 52 65.4
Actinidia00674 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.0e-07 62.8 206 28.6
RcHm_v2.0_Chr2g0170231 Rosa chinensis HOM05D002567 ORTHO05D006538 5.7e-07 61.2 48 58.3
Actinidia32248 Actinidia chinensis HOM05D002567 ORTHO05D006538 7.5e-07 60.8 64 60.9
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 9.8e-07 60.5 101 39.6
Solyc00g007350.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 2.2e-06 59.3 117 33.3
A06p16060 Brassica napus HOM05D002848 ORTHO05D003043 2.8e-06 58.9 205 28.8
BraA06t24712Z Brassica rapa HOM05D002848 ORTHO05D003043 2.8e-06 58.9 205 28.8
Potri.005G116001 Populus trichocarpa HOM05D002848 ORTHO05D003043 3.7e-06 58.5 83 39.8
PGSC0003DMG400003556 Solanum tuberosum HOM05D002848 ORTHO05D003043 3.7e-06 58.5 89 34.8
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 4.8e-06 58.2 82 36.6
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 4.8e-06 58.2 90 33.3


User provided reference genes

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