Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021875 Sechium edule HOM05D008619 ORTHO05D000090 1.3e-121 441.4 370 100.0
ClCG09G021760 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.6e-23 115.5 142 51.4
ClCG00G006240 Citrullus lanatus HOM05D008619 ORTHO05D000090 2.3e-17 95.1 252 64.7
ClCG09G008330 Citrullus lanatus HOM05D008619 ORTHO05D000090 3.9e-17 94.4 68 63.2
CsaV3_7G027280 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.1e-17 94.0 212 77.4
Sed0010182 Sechium edule HOM05D008619 ORTHO05D000090 5.1e-17 94.0 145 49.7
ClCG01G008120 Citrullus lanatus HOM05D008619 ORTHO05D000090 8.8e-17 93.2 144 46.5
CsaV3_7G027920 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.7e-16 90.5 68 60.3
Sed0025187 Sechium edule HOM05D008619 ORTHO05D000090 1.3e-15 89.4 68 55.9
CsaV3_7G027720 Cucumis sativus L. HOM05D008619 ORTHO05D000090 3.7e-15 87.8 68 58.8
Sed0002057 Sechium edule HOM05D008619 ORTHO05D000090 1.4e-14 85.9 277 64.6
MELO3C028898.2 Cucumis melo HOM05D008619 ORTHO05D000090 1.8e-14 85.5 214 75.2
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 2.4e-14 85.1 71 56.3
Sed0014539 Sechium edule HOM05D008619 ORTHO05D000090 4.1e-14 84.3 227 51.5
Prupe.8G230100 Prunus persica HOM05D008619 ORTHO05D000090 6.9e-14 83.6 71 50.7
ClCG01G008220 Citrullus lanatus HOM05D008619 ORTHO05D000090 9.1e-14 83.2 147 43.5
Sed0014525 Sechium edule HOM05D008619 ORTHO05D000090 9.1e-14 83.2 67 58.2
Actinidia33760 Actinidia chinensis HOM05D000162 ORTHO05D000090 2.0e-13 82.0 71 56.3
RcHm_v2.0_Chr6g0289191 Rosa chinensis HOM05D000162 ORTHO05D000090 2.6e-13 81.6 71 52.1
CsaV3_7G027260 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.9e-13 80.5 120 40.8
MD05G1203800 Malus domestica HOM05D008619 ORTHO05D000090 7.7e-13 80.1 71 52.1
Sed0005043 Sechium edule HOM05D008619 ORTHO05D000090 7.7e-13 80.1 98 46.9
CSS0034526 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.0e-12 79.7 131 38.9
CSS0040127 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.0e-12 79.7 131 38.9
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 2.2e-12 78.6 138 39.9
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 2.2e-12 78.6 136 36.0
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 2.2e-12 78.6 71 53.5
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.9e-11 75.5 136 35.3
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.5e-11 75.1 136 36.8
Thecc.01G265100 Theobroma cacao HOM05D008619 ORTHO05D000090 3.2e-11 74.7 142 35.9
QL12p042932 Quercus lobata HOM05D000162 ORTHO05D000090 9.4e-11 73.2 71 52.1
Hma1.2p1_0172F.1_g076330 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 2.1e-10 72.0 126 37.3
Atru.chr5.1765 Acer truncatum HOM05D008619 ORTHO05D000090 3.6e-10 71.2 273 59.7
CsaV3_7G022190 Cucumis sativus L. HOM05D008619 ORTHO05D000090 7.9e-10 70.1 132 37.9
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 7.9e-10 70.1 269 51.3
Sed0018285 Sechium edule HOM05D008619 ORTHO05D000090 1.8e-09 68.9 100 43.0
Nitab4.5_0003279g0010 Nicotiana tabacum HOM05D008619 ORTHO05D000090 2.3e-09 68.6 71 43.7
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.0e-09 68.2 132 36.4
TAR629G0197 Trochodendron aralioides HOM05D000162 ORTHO05D000090 3.9e-09 67.8 137 39.4
MELO3C015722.2 Cucumis melo HOM05D008619 ORTHO05D025208 5.1e-09 67.4 56 55.4
Duzib138G1327 Durio zibethinus HOM05D008619 ORTHO05D000090 5.1e-09 67.4 143 35.7
Cpa.g.sc161.35 Carica papaya HOM05D000162 ORTHO05D000090 6.7e-09 67.0 69 42.0
MELO3C012708.2 Cucumis melo HOM05D008619 ORTHO05D000090 1.1e-08 66.2 132 36.4
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 1.1e-08 66.2 139 34.5
CANSAT80G2501 Cannabis sativa HOM05D000162 ORTHO05D000090 1.5e-08 65.9 135 37.8
Gohir.A11G128001 Gossypium hirsutum HOM05D024768 ORTHO05D021044 1.5e-08 65.9 139 36.0
Ciclev10024138m.g Citrus clementina HOM05D000162 ORTHO05D000090 2.6e-08 65.1 132 32.6
AUR62032236 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.3e-08 64.7 74 43.2
Ciclev10028053m.g Citrus clementina HOM05D000162 ORTHO05D000090 3.3e-08 64.7 72 41.7
Eucgr.K03302 Eucalyptus grandis HOM05D000162 ORTHO05D000090 3.3e-08 64.7 138 35.5
Lj1P60T47 Lonicera japonica HOM05D008619 ORTHO05D000090 3.3e-08 64.7 141 33.3
MBI11_g34863_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 4.4e-08 64.3 130 34.6
Atru.chr6.396 Acer truncatum HOM05D000162 ORTHO05D000090 7.4e-08 63.5 71 42.3
Atru.chr6.444 Acer truncatum HOM05D000162 ORTHO05D000090 7.4e-08 63.5 71 42.3
Oeu025825.1 Olea europaea HOM05D000162 ORTHO05D000090 7.4e-08 63.5 71 43.7
Sed0000927 Sechium edule HOM05D008619 ORTHO05D000090 7.4e-08 63.5 49 59.2
vmacro02633 Vaccinium macrocarpon HOM05D008619 ORTHO05D000090 7.4e-08 63.5 121 36.4
Atru.chr6.231 Acer truncatum HOM05D000162 ORTHO05D000090 9.7e-08 63.2 65 41.5
PSO732G0225 Papaver somniferum HOM05D000162 ORTHO05D000090 9.7e-08 63.2 72 45.8
CsaV3_7G027240 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.7e-07 62.4 116 40.5
CANSAT11G1734 Cannabis sativa HOM05D000162 ORTHO05D000090 2.2e-07 62.0 140 33.6
PSO063G0380 Papaver somniferum HOM05D000162 ORTHO05D000090 2.2e-07 62.0 72 43.1
Lsat_1_v5_gn_9_9621 Lactuca sativa HOM05D000162 ORTHO05D000090 2.8e-07 61.6 71 42.3
PSO378G0001 Papaver somniferum HOM05D000162 ORTHO05D000090 2.8e-07 61.6 72 44.4
PSO675G4027 Papaver somniferum HOM05D000162 ORTHO05D000090 2.8e-07 61.6 72 44.4
PSO675G5902 Papaver somniferum HOM05D000162 ORTHO05D000090 2.8e-07 61.6 72 44.4
PSO732G0790 Papaver somniferum HOM05D000162 ORTHO05D000090 3.7e-07 61.2 72 44.4
Ciclev10030361m.g Citrus clementina HOM05D012581 ORTHO05D000090 6.3e-07 60.5 76 43.4
Nitab4.5_0000187g0340 Nicotiana tabacum HOM05D008619 ORTHO05D000090 8.2e-07 60.1 51 52.9
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 8.2e-07 60.1 68 47.1
PSO063G6560 Papaver somniferum HOM05D000162 ORTHO05D000090 1.1e-06 59.7 72 43.1
Sed0025833 Sechium edule HOM05D008619 ORTHO05D025208 1.1e-06 59.7 92 39.1
PSO782G3573 Papaver somniferum HOM05D000162 ORTHO05D000090 1.8e-06 58.9 70 44.3
Cc01_g18680 Coffea canephora HOM05D000162 ORTHO05D000090 2.4e-06 58.5 76 42.1
PSO732G0487 Papaver somniferum HOM05D000162 ORTHO05D000090 2.4e-06 58.5 72 41.7
Eucgr.K03304 Eucalyptus grandis HOM05D000162 ORTHO05D000090 3.1e-06 58.2 138 30.4
PSO832G3344 Papaver somniferum HOM05D018600 ORTHO05D000090 3.1e-06 58.2 58 46.6
QL04p041428 Quercus lobata HOM05D000162 ORTHO05D000090 3.1e-06 58.2 72 38.9
Ciclev10030242m.g Citrus clementina HOM05D012581 ORTHO05D000090 4.1e-06 57.8 76 43.4
Eucgr.K03305 Eucalyptus grandis HOM05D000162 ORTHO05D000090 4.1e-06 57.8 138 31.2
Nn1g02625 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.1e-06 57.8 72 43.1
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 5.3e-06 57.4 57 43.9
PSO732G0429 Papaver somniferum HOM05D000162 ORTHO05D000090 5.3e-06 57.4 68 44.1
MD03G1106000 Malus domestica HOM05D000162 ORTHO05D000090 6.9e-06 57.0 52 50.0
PSO675G1267 Papaver somniferum HOM05D000162 ORTHO05D000090 6.9e-06 57.0 72 41.7


User provided reference genes

Program Settings