Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 2218.0 1144 100.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1887.1 1148 84.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1815.4 1104 83.3
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 0.0e+00 1467.6 921 81.8
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1275.8 1161 58.6
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1265.4 1161 58.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1264.6 1161 57.4
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1259.2 1165 58.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1258.0 1230 55.4
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1243.0 1163 56.7
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1238.8 1146 57.5
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1236.1 1162 57.1
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1234.2 1162 56.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1220.7 1162 56.1
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1220.3 1154 56.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1214.1 1156 56.7
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1213.4 1160 55.6
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1211.1 1157 55.7
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1205.3 1150 55.4
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1200.7 1156 55.7
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1196.8 1164 56.0
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1192.2 1165 53.8
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1183.7 1157 54.2
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1176.4 1153 55.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1167.1 1142 54.1
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1145.2 1157 54.1
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1142.5 1145 53.6
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1136.3 1153 52.8
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1152 53.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1123.2 1101 54.8
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1117.4 1138 52.3
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1116.7 1144 53.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1111.7 1158 52.6
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1106.3 1207 51.2
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1101.3 1157 52.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1093.6 1142 52.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1159 51.4
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1087.0 1144 50.7
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1086.2 1159 52.5
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1085.9 1141 51.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1083.9 1156 51.4
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1080.1 1154 52.3
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1075.8 1150 51.0
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 7.8e-312 1073.5 1163 50.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 3.0e-306 1055.4 1155 51.1
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.8e-306 1054.3 1157 49.7
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 2.0e-305 1052.7 1149 50.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 3.4e-305 1052.0 1159 50.3
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.4e-305 1051.6 1152 50.1
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 2.8e-304 1048.9 1165 48.8
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 3.7e-304 1048.5 1158 49.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 4.9e-304 1048.1 1068 52.1
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 9.2e-303 1043.9 1151 50.7
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.6e-302 1043.1 1143 50.6
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.8e-301 1038.5 1234 47.5
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.1e-300 1036.9 1156 48.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 3.6e-299 1031.9 1158 49.9
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1104 50.4
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-296 1023.5 1155 49.0
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.2e-289 1000.3 1161 47.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.9e-287 993.0 1160 47.2
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1125 48.5
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1160 47.9
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.0e-286 989.6 1157 47.5
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.0e-285 985.7 1160 47.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.6e-283 978.8 1145 48.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.0e-281 973.0 1155 47.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.9e-280 968.4 1156 47.0
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 5.4e-279 964.9 1155 46.9
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 5.4e-279 964.9 1103 49.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1053 50.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.7e-278 962.6 1149 46.7
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.5e-278 962.2 1163 46.4
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.3e-277 959.5 1160 47.2
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.6e-275 953.4 1152 46.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.6e-275 952.2 1149 46.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.2e-272 943.0 1170 45.1
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.4e-272 941.4 1146 45.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 8.4e-272 941.0 1139 46.8
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.4e-271 940.3 1162 46.2
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 6.0e-270 934.9 998 51.3
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 5.2e-266 921.8 1030 49.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.4e-263 913.7 1073 47.9
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 9.6e-260 901.0 1102 47.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 5.1e-253 878.6 1126 45.5
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.7e-248 863.6 952 49.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 5.5e-247 858.6 1144 44.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.3e-245 853.2 1155 42.6
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.4e-241 839.3 1155 41.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.0e-240 837.8 1076 44.3
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.3e-235 818.5 1126 43.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.1e-234 817.8 1150 41.2
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.4e-226 790.8 1141 42.4
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 9.7e-212 741.5 914 45.5
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.4e-170 604.0 1062 36.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 6.4e-147 526.2 1199 31.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 9.0e-133 479.2 645 42.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.8e-131 473.8 1181 29.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-128 465.3 690 40.9
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.7e-128 463.0 455 57.6
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.3e-118 432.2 232 93.5
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-117 429.1 538 43.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.8e-112 409.5 1125 28.7
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 5.3e-109 400.2 515 44.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.1e-109 399.4 437 49.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.2e-106 389.8 337 57.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.5e-103 382.1 458 48.9
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.7e-89 334.0 450 44.0
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.2e-76 292.7 232 63.8
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.8e-73 281.6 1303 24.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.1e-64 251.5 195 65.6
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 5.8e-63 247.3 155 73.5
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 4.9e-62 244.2 315 48.3
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.0e-59 236.5 335 44.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.5e-55 222.6 180 61.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.1e-53 216.5 269 46.8
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 2.1e-44 185.7 201 54.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.8e-44 183.7 223 42.6
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.2e-36 159.8 159 49.7
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.2e-33 149.8 119 63.9
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 2.4e-29 135.6 132 56.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 5.4e-29 134.4 172 42.4
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 7.8e-28 130.6 1294 20.8
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.7e-27 129.4 123 52.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.5e-26 125.6 123 51.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.3e-26 125.2 180 43.3
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.3e-26 125.2 177 39.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.6e-26 124.4 102 65.7
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.3e-25 123.2 181 41.4
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.3e-25 123.2 181 41.4
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.4e-24 119.8 265 34.0
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-23 115.5 96 65.6
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-23 115.5 96 65.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.6e-23 115.5 119 51.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 5.4e-21 107.8 93 58.1
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 6.0e-20 104.4 63 61.9
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 3.0e-19 102.1 75 65.3
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.6e-18 97.1 127 44.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.4e-15 88.6 55 80.0
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 7.6e-15 87.4 145 35.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-14 86.7 73 60.3
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.4e-13 83.2 90 45.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.9e-13 82.8 92 44.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 3.2e-13 82.0 155 32.9
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 9.3e-13 80.5 62 62.9
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 3.3e-10 72.0 122 36.9
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.4e-08 66.6 64 54.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.0e-08 65.1 68 51.5
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 6.9e-08 64.3 48 58.3
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 4.5e-07 61.6 88 43.2


User provided reference genes

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