Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.4e-75 286.2 143 100.0
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 8.5e-57 223.8 144 78.5
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.1e-39 166.0 142 54.9
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 8.9e-38 160.6 142 53.5
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 2.6e-37 159.1 141 53.9
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 4.9e-36 154.8 141 54.6
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 5.0e-33 144.8 141 51.1
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 4.3e-32 141.7 150 45.3
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.2e-31 140.2 140 47.9
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 3.6e-31 138.7 139 48.9
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.0e-30 137.1 138 47.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 4.4e-29 131.7 138 48.6
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 1.3e-28 130.2 141 48.2
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.2e-28 129.4 140 42.9
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 3.7e-28 128.6 133 46.6
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.4e-27 126.7 139 44.6
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.2e-27 125.6 140 43.6
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.1e-27 125.2 141 44.0
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 9.2e-27 124.0 141 43.3
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 9.2e-27 124.0 141 43.3
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.6e-26 123.2 138 44.9
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 3.5e-26 122.1 138 44.2
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 4.6e-26 121.7 143 45.5
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 6.0e-26 121.3 141 42.6
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.0e-26 121.3 138 43.5
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 7.8e-26 120.9 142 42.3
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 7.8e-26 120.9 133 45.9
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 7.8e-26 120.9 141 44.7
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.3e-25 120.2 135 42.2
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 1.3e-25 120.2 132 48.5
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.3e-25 119.4 132 44.7
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 3.0e-25 119.0 136 45.6
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 3.0e-25 119.0 140 41.4
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 5.0e-25 118.2 138 44.9
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.3e-24 115.5 136 43.4
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.3e-24 115.5 125 46.4
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.3e-24 115.2 133 45.1
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 4.3e-24 115.2 140 42.1
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 5.6e-24 114.8 138 42.0
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 7.3e-24 114.4 137 41.6
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 7.3e-24 114.4 135 43.0
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 7.3e-24 114.4 137 40.9
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 7.3e-24 114.4 136 44.9
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 9.5e-24 114.0 137 40.9
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 9.5e-24 114.0 136 42.6
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.2e-23 113.6 137 41.6
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.2e-23 113.6 137 40.9
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.2e-23 113.6 137 40.9
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.2e-23 113.6 140 43.6
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 1.6e-23 113.2 143 40.6
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 1.6e-23 113.2 143 40.6
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 2.1e-23 112.8 138 43.5
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.8e-23 112.5 133 43.6
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 2.8e-23 112.5 133 43.6
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 2.8e-23 112.5 140 40.0
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 3.6e-23 112.1 137 40.9
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 4.7e-23 111.7 120 45.8
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 6.2e-23 111.3 135 45.2
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 1.4e-22 110.2 134 43.3
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 3.1e-22 109.0 131 47.3
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 4.0e-22 108.6 137 41.6
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 8.9e-22 107.5 134 45.5
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 8.9e-22 107.5 151 37.1
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.5e-21 106.7 138 42.0
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.0e-21 106.3 134 40.3
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 2.6e-21 105.9 138 42.8
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 5.8e-21 104.8 138 39.1
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 5.8e-21 104.8 134 43.3
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 7.5e-21 104.4 138 42.8
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.2e-20 102.8 134 43.3
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 4.9e-20 101.7 136 39.7
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 4.9e-20 101.7 138 39.1
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.1e-19 100.5 134 37.3
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 1.4e-19 100.1 138 40.6
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 4.1e-19 98.6 143 37.8
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 9.2e-19 97.4 133 36.1
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 9.2e-19 97.4 134 35.8
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 3.5e-18 95.5 119 44.5
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 1.3e-17 93.6 133 40.6
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 8.6e-17 90.9 134 36.6
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 1.5e-16 90.1 119 42.0
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 1.5e-16 90.1 134 35.8
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 3.3e-16 89.0 136 38.2
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 7.3e-16 87.8 134 37.3
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.2e-15 87.0 133 39.1
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.6e-15 85.5 129 39.5
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 8.1e-15 84.3 117 41.0
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 2.3e-14 82.8 133 33.1
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 5.2e-14 81.6 119 38.7
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.2e-13 80.5 132 36.4
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 2.0e-13 79.7 107 41.1
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 2.0e-13 79.7 107 41.1
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 2.6e-13 79.3 126 38.1
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 3.4e-13 79.0 107 40.2
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 3.4e-13 79.0 107 40.2
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 4.4e-13 78.6 107 40.2
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 7.5e-13 77.8 136 33.1
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 9.9e-13 77.4 74 44.6
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 2.2e-12 76.3 110 34.5
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.9e-12 75.1 121 36.4
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 6.4e-12 74.7 133 33.8
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.1e-11 73.9 135 31.1
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 1.4e-11 73.6 133 34.6
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 1.4e-11 73.6 132 42.4
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 2.4e-11 72.8 126 38.1
MBI05_g33720_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 3.2e-11 72.4 140 30.0
MELO3C011013.2 Cucumis melo HOM05D005726 ORTHO05D001733 7.1e-11 71.2 35 88.6
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 2.1e-10 69.7 110 35.5
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 3.5e-10 68.9 132 36.4
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 3.5e-10 68.9 142 37.3
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 4.6e-10 68.6 123 36.6
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.0e-09 67.4 110 34.5
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.3e-09 67.0 110 34.5
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 3.0e-09 65.9 121 32.2
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 3.0e-09 65.9 133 30.1
Zm00001eb210440 Zea mays HOM05D005726 ORTHO05D001733 3.9e-09 65.5 139 29.5
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 6.6e-09 64.7 114 29.8
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 8.6e-09 64.3 119 31.1
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 8.6e-09 64.3 110 34.5
SGA_v2.0_scaffold390G50608 Striga asiatica HOM05D005726 ORTHO05D001733 1.5e-08 63.5 135 34.1
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.9e-08 63.2 118 32.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.9e-08 63.2 118 32.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.9e-08 63.2 118 32.2
Hma1.2p1_1385F.1_g279720 Hydrangea macrophylla HOM05D007714 ORTHO05D009659 1.9e-08 63.2 113 29.2
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 2.5e-08 62.8 112 33.9
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 2.5e-08 62.8 108 34.3
SalBow8G4445 Salvia bowleyana HOM05D005726 ORTHO05D001733 3.3e-08 62.4 136 30.1
Phvul.002G200900 Phaseolus vulgaris HOM05D018548 ORTHO05D020752 5.6e-08 61.6 127 36.2
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 7.3e-08 61.2 143 30.8
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 7.3e-08 61.2 124 30.6
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 1.2e-07 60.5 114 34.2
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.2e-07 60.5 122 32.8
Glyma.08G079700 Glycine max HOM05D018548 ORTHO05D020752 1.6e-07 60.1 126 35.7
MBI09_g26111_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D009659 1.6e-07 60.1 113 29.2
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.6e-07 60.1 111 33.3
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 1.6e-07 60.1 112 34.8
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 2.1e-07 59.7 122 32.0
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 2.1e-07 59.7 103 35.9
Lsat_1_v5_gn_8_125861 Lactuca sativa HOM05D005726 ORTHO05D001733 2.8e-07 59.3 89 39.3
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 2.8e-07 59.3 106 35.8
MD05G1115400 Malus domestica HOM05D007714 ORTHO05D009659 2.8e-07 59.3 111 29.7
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 2.8e-07 59.3 110 33.6
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 4.7e-07 58.5 103 34.0
MD10G1117900 Malus domestica HOM05D007714 ORTHO05D009659 6.2e-07 58.2 111 30.6
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 6.2e-07 58.2 113 31.9
FAN27G1210 Fragaria x ananassa HOM05D007714 ORTHO05D009659 1.1e-06 57.4 111 29.7
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.1e-06 57.4 106 34.9
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 1.8e-06 56.6 103 30.1
Oeu055640.1 Olea europaea HOM05D007714 ORTHO05D009659 1.8e-06 56.6 112 31.2
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 1.8e-06 56.6 103 35.0
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 1.8e-06 56.6 99 35.4
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 1.8e-06 56.6 114 32.5
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 2.4e-06 56.2 108 32.4
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 2.4e-06 56.2 103 35.9
Eucgr.I01373 Eucalyptus grandis HOM05D007714 ORTHO05D009659 2.4e-06 56.2 118 29.7
Medtr4g075500 Medicago truncatula HOM05D007714 ORTHO05D009659 2.4e-06 56.2 113 29.2
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 2.4e-06 56.2 110 32.7
ATR1042G001 Amborella trichopoda HOM05D003064 ORTHO05D009659 3.1e-06 55.8 120 28.3
Aqoxy2G00087 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 3.1e-06 55.8 113 33.6
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 3.1e-06 55.8 110 31.8
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 3.1e-06 55.8 110 30.9
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 3.1e-06 55.8 61 41.0
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 3.1e-06 55.8 118 32.2
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 4.0e-06 55.5 107 33.6
DCAR_003697 Daucus carota HOM05D007714 ORTHO05D009659 4.0e-06 55.5 113 30.1
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 5.2e-06 55.1 108 31.5
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 5.2e-06 55.1 107 31.8
Glyma.04G005451 Glycine max HOM05D005726 ORTHO05D001733 5.2e-06 55.1 72 41.7
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 5.2e-06 55.1 110 30.0
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 5.2e-06 55.1 110 31.8
Prupe.8G160200 Prunus persica HOM05D007714 ORTHO05D009659 5.2e-06 55.1 111 30.6
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 5.2e-06 55.1 110 31.8
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 6.8e-06 54.7 89 38.2
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 6.8e-06 54.7 101 29.7
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 6.8e-06 54.7 101 33.7
Potri.004G167700 Populus trichocarpa HOM05D007714 ORTHO05D009659 6.8e-06 54.7 112 28.6
Sabra04G0112500 Salix brachista HOM05D007714 ORTHO05D009659 6.8e-06 54.7 112 28.6
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 6.8e-06 54.7 128 32.0
Lj3g0018720 Lotus japonicus HOM05D007714 ORTHO05D009659 8.9e-06 54.3 114 26.3
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 8.9e-06 54.3 108 31.5
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 8.9e-06 54.3 108 31.5
RcHm_v2.0_Chr6g0245291 Rosa chinensis HOM05D007714 ORTHO05D009659 8.9e-06 54.3 111 28.8


User provided reference genes

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