Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 2.0e-95 352.4 179 100.0
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.8e-72 276.2 160 85.6
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.3e-70 270.0 160 85.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 5.1e-67 258.1 160 83.1
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.4e-43 180.3 131 61.8
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.1e-42 177.2 131 62.6
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.5e-42 176.8 178 54.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.3e-42 175.6 139 61.2
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 5.7e-42 174.9 140 60.0
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 5.7e-42 174.9 173 53.2
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 7.4e-42 174.5 168 55.4
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.4e-42 174.5 139 60.4
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.2e-41 172.9 134 61.2
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 2.2e-41 172.9 134 63.4
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.7e-41 172.2 163 55.2
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 3.7e-41 172.2 165 55.2
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 4.8e-41 171.8 122 64.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 4.8e-41 171.8 139 59.7
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.8e-41 171.8 139 59.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 6.3e-41 171.4 169 55.6
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.1e-40 170.6 131 61.1
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 1.2e-39 167.2 135 60.0
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 2.6e-39 166.0 135 59.3
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 2.6e-39 166.0 140 58.6
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 3.4e-39 165.6 161 52.8
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 3.4e-39 165.6 131 58.0
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.0e-38 164.1 183 48.6
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.9e-38 162.5 164 50.0
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 5.0e-38 161.8 144 54.9
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 8.5e-38 161.0 132 59.1
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.1e-37 160.6 131 60.3
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 3.2e-37 159.1 131 60.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 4.2e-37 158.7 140 53.6
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 4.2e-37 158.7 122 63.1
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.2e-36 157.1 131 59.5
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.2e-36 157.1 140 54.3
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.6e-36 156.8 131 54.2
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.6e-36 156.8 131 54.2
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.6e-36 156.8 163 51.5
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 2.1e-36 156.4 117 65.0
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 2.1e-36 156.4 165 49.1
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.1e-36 154.8 131 54.2
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 7.9e-36 154.5 131 55.7
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.0e-35 154.1 134 50.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.4e-35 153.7 135 48.9
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.8e-35 153.3 129 55.8
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.3e-35 152.9 114 57.0
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.9e-35 152.1 163 49.1
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 8.8e-35 151.0 131 55.0
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.5e-34 150.2 132 56.8
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.3e-34 149.1 114 56.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 4.4e-34 148.7 134 53.7
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 7.4e-34 147.9 132 55.3
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 9.7e-34 147.5 149 47.7
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.7e-34 147.5 169 43.2
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 9.7e-34 147.5 158 51.3
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.7e-33 146.7 135 51.9
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 2.2e-33 146.4 162 47.5
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 2.8e-33 146.0 162 48.1
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 3.7e-33 145.6 131 53.4
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 4.8e-33 145.2 134 48.5
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 8.2e-33 144.4 128 52.3
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 8.2e-33 144.4 123 56.1
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.1e-32 144.1 181 47.0
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.4e-32 143.7 112 58.9
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.4e-32 143.7 172 44.2
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.4e-32 143.7 172 44.8
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 4.1e-32 142.1 123 51.2
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 9.1e-32 141.0 123 51.2
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 9.1e-32 141.0 132 50.0
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.2e-31 140.6 137 48.9
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.2e-31 140.6 119 53.8
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.2e-31 140.6 112 55.4
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.6e-31 139.4 166 42.2
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 4.5e-31 138.7 154 50.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 5.9e-31 138.3 147 47.6
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 5.9e-31 138.3 147 47.6
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 5.9e-31 138.3 110 53.6
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 5.9e-31 138.3 132 47.7
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 1.3e-30 137.1 157 45.9
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.7e-30 136.7 172 41.9
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.7e-30 136.7 122 52.5
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 2.2e-30 136.3 138 44.9
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.2e-30 136.3 147 46.9
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.2e-30 136.3 147 46.9
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 2.9e-30 136.0 151 45.7
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.8e-30 135.6 162 41.4
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 5.0e-30 135.2 153 43.8
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 6.5e-30 134.8 132 46.2
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 8.5e-30 134.4 162 42.6
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.9e-29 133.3 153 44.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.5e-29 131.7 166 42.8
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.4e-29 131.0 153 45.8
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 8.0e-28 127.9 154 42.9
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 8.0e-28 127.9 138 47.1
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.8e-27 126.7 141 48.2
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 8.8e-27 124.4 123 43.9
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.0e-18 96.7 84 53.6
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.8e-18 94.4 80 52.5
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.1e-16 89.4 153 31.4
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 2.9e-14 82.8 62 62.9
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-13 80.9 64 53.1
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.5e-13 80.5 129 35.7
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 7.2e-13 78.2 107 46.7
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 1.6e-12 77.0 73 42.5
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.2e-10 70.9 58 50.0
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.2e-10 70.9 124 31.5
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.3e-09 67.4 174 31.0
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 2.4e-08 63.2 162 29.6
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 7.0e-08 61.6 86 31.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 9.1e-08 61.2 87 33.3
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.6e-07 60.5 109 32.1
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.0e-06 57.8 112 28.6
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.3e-06 56.6 110 30.0
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 3.8e-06 55.8 118 28.8
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 3.8e-06 55.8 134 25.4
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 5.0e-06 55.5 111 25.2
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 5.0e-06 55.5 104 27.9
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 8.6e-06 54.7 106 25.5


User provided reference genes

Program Settings