Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.3e-84 316.2 150 100.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.4e-32 142.1 88 80.7
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 9.9e-32 140.6 76 88.2
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.9e-31 139.0 88 78.4
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.1e-30 137.1 89 74.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.4e-30 136.0 89 73.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.4e-30 136.0 89 74.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.2e-30 135.6 89 73.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 3.2e-30 135.6 89 73.0
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.2e-30 135.2 89 73.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-29 133.7 89 73.0
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.6e-29 133.3 89 73.0
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.6e-29 133.3 91 71.4
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.1e-29 132.9 98 68.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.1e-29 132.9 89 71.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.7e-29 132.5 79 78.5
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.5e-29 132.1 88 71.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.0e-28 130.6 89 70.8
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.0e-28 130.6 88 71.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.3e-28 130.2 90 71.1
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.3e-28 129.4 79 75.9
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.9e-28 128.6 91 67.0
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 5.1e-28 128.3 88 70.5
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 5.1e-28 128.3 77 75.3
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 8.7e-28 127.5 91 69.2
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.1e-27 127.1 84 72.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-27 127.1 84 72.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.5e-27 126.7 74 79.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.5e-27 126.7 77 75.3
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.5e-27 125.9 90 70.0
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.3e-27 125.6 91 69.2
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.3e-27 125.6 79 73.4
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.3e-27 125.2 91 69.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.3e-27 125.2 91 68.1
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 5.6e-27 124.8 89 68.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 7.4e-27 124.4 83 69.9
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 7.4e-27 124.4 83 69.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 9.6e-27 124.0 86 67.4
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 9.6e-27 124.0 90 67.8
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.3e-26 123.6 89 68.5
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.3e-26 123.6 77 74.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.6e-26 123.2 83 72.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.6e-26 123.2 83 72.3
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.6e-26 123.2 88 67.0
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.7e-26 122.1 89 68.5
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 8.2e-26 120.9 85 67.1
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 8.2e-26 120.9 85 67.1
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.1e-25 120.6 83 73.5
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.1e-25 120.6 87 65.5
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.1e-25 120.6 88 65.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.4e-25 120.2 88 67.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.4e-25 120.2 81 67.9
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-25 120.2 83 67.5
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.4e-25 119.4 87 67.8
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.4e-25 119.4 81 72.8
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.4e-25 119.4 76 76.3
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 2.4e-25 119.4 92 63.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 3.1e-25 119.0 90 67.8
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.0e-25 118.6 88 67.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 4.0e-25 118.6 81 69.1
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 6.9e-25 117.9 94 61.7
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 9.0e-25 117.5 79 73.4
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 9.0e-25 117.5 94 60.6
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 9.0e-25 117.5 83 69.9
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.5e-24 116.7 87 66.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.0e-24 116.3 79 73.4
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.6e-24 115.9 86 68.6
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.6e-24 115.9 79 67.1
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.6e-24 115.9 76 72.4
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.6e-24 115.9 101 60.4
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.4e-24 115.5 89 62.9
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.4e-24 115.5 86 66.3
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.4e-24 115.5 76 72.4
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.5e-24 115.2 79 72.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 5.8e-24 114.8 83 65.1
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.8e-24 114.8 83 68.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 5.8e-24 114.8 103 59.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 5.8e-24 114.8 79 65.8
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.6e-24 114.4 77 72.7
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-23 114.0 91 64.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.0e-23 114.0 74 71.6
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.0e-23 114.0 79 70.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-23 113.6 88 67.0
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-23 113.6 77 71.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-23 113.6 106 54.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-23 113.6 88 67.0
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-23 113.6 77 71.4
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.3e-23 113.6 68 77.9
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.3e-23 113.6 85 67.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.7e-23 113.2 88 63.6
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.7e-23 113.2 79 65.8
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.2e-23 112.8 81 69.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.2e-23 112.8 81 69.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.9e-23 112.5 74 70.3
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.9e-23 112.5 71 71.8
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.8e-23 112.1 80 70.0
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 3.8e-23 112.1 87 63.2
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.8e-23 112.1 82 69.5
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 6.5e-23 111.3 82 63.4
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 8.4e-23 110.9 73 71.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-22 110.5 73 72.6
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-22 110.5 73 72.6
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.1e-22 110.5 77 70.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 2.5e-22 109.4 77 70.1
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.5e-22 109.4 76 65.8
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 3.2e-22 109.0 78 70.5
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 5.5e-22 108.2 92 64.1
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 9.3e-22 107.5 85 63.5
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 9.3e-22 107.5 93 60.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.6e-21 106.7 78 69.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.1e-21 106.3 73 69.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-21 106.3 117 47.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.5e-21 105.5 68 70.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-20 104.0 68 69.1
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.3e-20 103.6 72 69.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.8e-20 103.2 75 68.0
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 3.0e-20 102.4 69 69.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.9e-20 102.1 77 62.3
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 5.1e-20 101.7 77 62.3
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.1e-19 100.5 80 62.5
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.5e-19 100.1 67 73.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.5e-19 100.1 72 65.3
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.5e-19 100.1 72 65.3
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.9e-19 99.8 58 75.9
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.3e-19 98.6 77 62.3
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.7e-19 98.2 70 64.3
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 5.7e-19 98.2 78 62.8
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 5.7e-19 98.2 78 62.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 9.7e-19 97.4 78 61.5
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.6e-18 96.7 79 59.5
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.8e-18 95.9 69 65.2
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.3e-18 94.7 64 65.6
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 8.2e-18 94.4 78 53.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.4e-17 92.8 80 57.5
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-17 92.8 80 57.5
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 4.1e-17 92.0 74 60.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.3e-17 91.7 72 62.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.9e-17 91.3 63 66.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-16 90.5 67 62.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.0e-16 89.7 66 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.6e-16 89.4 65 58.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.6e-16 89.4 77 55.8
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.6e-16 89.4 63 65.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-15 87.0 62 59.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.9e-15 85.9 63 61.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.5e-15 84.3 63 63.5
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.4e-14 83.6 78 51.3
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.2e-14 82.0 62 58.1
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-13 80.5 57 64.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.6e-13 80.1 61 65.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-13 79.7 114 41.2
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.5e-11 72.8 61 50.8
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.3e-10 68.2 42 76.2
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-09 67.4 39 74.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.4e-09 66.2 64 48.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 7.2e-06 54.7 43 62.8


User provided reference genes

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