Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.3e-97 359.8 182 100.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.2e-84 316.6 167 92.8
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.2e-84 316.6 167 92.8
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.6e-84 315.1 167 92.2
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.4e-83 313.2 167 92.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.7e-82 307.0 167 89.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.2e-81 305.8 167 89.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.2e-81 305.8 167 89.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.2e-81 305.8 167 89.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.7e-81 305.1 167 88.6
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 8.2e-81 303.9 167 88.6
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-80 303.5 167 88.0
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.4e-80 303.1 167 88.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.4e-80 303.1 167 88.0
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.4e-80 302.4 167 88.6
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.4e-80 302.4 167 88.6
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.4e-80 302.4 167 87.4
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.1e-80 302.0 167 87.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.1e-80 301.6 167 86.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 4.1e-80 301.6 167 87.4
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.3e-80 301.2 166 88.0
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 7.0e-80 300.8 167 88.6
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 7.0e-80 300.8 167 88.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 7.0e-80 300.8 171 85.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.0e-80 300.8 167 88.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.1e-80 300.4 167 87.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.2e-79 300.1 167 86.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.6e-79 299.7 167 86.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.6e-79 299.7 167 86.8
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.0e-79 299.3 167 88.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.7e-79 298.9 167 86.2
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.7e-79 298.9 167 86.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.7e-79 298.9 167 86.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.7e-79 298.9 167 86.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 3.5e-79 298.5 167 86.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.5e-79 298.5 167 85.6
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.5e-79 298.1 167 86.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 4.5e-79 298.1 167 86.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.9e-79 297.7 167 86.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.9e-79 297.7 167 86.2
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 5.9e-79 297.7 167 86.2
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 5.9e-79 297.7 167 87.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.7e-79 297.4 167 86.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 7.7e-79 297.4 167 86.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.0e-78 297.0 167 85.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.0e-78 297.0 167 86.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.0e-78 297.0 167 85.6
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-78 296.6 167 86.2
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.3e-78 296.6 167 85.6
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-78 296.2 167 85.6
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.7e-78 296.2 167 86.2
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.2e-78 295.8 167 86.2
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.9e-78 295.4 167 84.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.9e-78 295.4 167 84.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.9e-78 295.4 169 85.2
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.9e-78 295.4 167 86.2
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.9e-78 295.4 166 87.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.8e-78 295.0 167 85.6
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.8e-78 295.0 167 84.4
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.0e-78 294.7 167 84.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 5.0e-78 294.7 167 85.6
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.0e-78 294.7 172 84.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.5e-78 294.3 167 85.6
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 8.5e-78 293.9 167 85.6
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 8.5e-78 293.9 171 86.0
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.5e-78 293.9 167 85.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.1e-77 293.5 163 87.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.1e-77 293.5 167 84.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.1e-77 293.5 167 85.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-77 293.1 167 83.8
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.5e-77 293.1 167 83.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.5e-77 293.1 167 84.4
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.5e-77 293.1 167 86.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 83.2
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 85.0
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 85.0
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 85.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 84.4
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.5e-77 292.4 167 84.4
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 5.5e-77 291.2 167 85.0
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 5.5e-77 291.2 167 85.0
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 5.5e-77 291.2 167 85.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 9.4e-77 290.4 167 84.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.2e-76 290.0 167 83.2
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.6e-76 289.7 167 84.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.7e-76 288.9 169 81.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 4.7e-76 288.1 173 79.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 6.1e-76 287.7 167 82.6
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 6.1e-76 287.7 167 84.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 6.1e-76 287.7 177 80.2
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.0e-76 287.3 167 83.8
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.0e-75 287.0 166 83.1
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.0e-75 287.0 167 82.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.8e-75 286.2 167 82.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 3.0e-75 285.4 167 81.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 4.0e-75 285.0 167 82.6
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 5.2e-75 284.6 167 82.6
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 5.2e-75 284.6 167 81.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.8e-75 284.3 167 81.4
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 8.8e-75 283.9 167 80.8
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.5e-74 283.1 167 80.8
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.0e-74 282.7 167 80.2
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 4.4e-74 281.6 161 86.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.1e-72 276.9 157 86.0
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.1e-72 276.9 161 83.9
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.1e-72 276.9 161 83.9
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.1e-72 275.0 161 83.2
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.0e-71 272.7 152 87.5
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.5e-71 271.9 167 77.8
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 5.9e-71 271.2 161 82.6
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 7.7e-71 270.8 167 81.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-70 270.0 161 81.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.2e-70 269.2 157 84.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.4e-67 260.0 167 73.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.0e-66 256.1 144 86.1
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.0e-66 256.1 144 86.8
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.5e-58 229.9 167 70.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.9e-57 225.7 167 71.3
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 7.0e-56 221.1 117 92.3
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.9e-55 218.0 187 62.0
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.0e-54 214.9 155 71.0
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.5e-53 212.6 167 65.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.2e-52 210.3 164 62.2
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.4e-51 206.8 164 59.8
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 3.1e-51 205.7 167 59.3
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 4.4e-50 201.8 167 59.3
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.5e-47 192.2 108 85.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 8.6e-46 187.6 167 52.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 4.4e-42 175.3 157 59.9
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 9.8e-42 174.1 139 66.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.3e-41 173.7 101 85.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.1e-39 166.4 168 48.2
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 6.0e-39 164.9 97 82.5
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 8.6e-38 161.0 171 50.3
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 5.6e-37 158.3 164 47.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 3.1e-35 152.5 167 41.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 4.0e-35 152.1 156 58.3
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.9e-29 133.3 185 40.0
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-29 132.9 171 46.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.2e-28 130.6 167 44.9
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.4e-26 122.1 168 38.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-24 117.5 76 76.3
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.2e-24 115.5 92 64.1
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 7.8e-23 111.3 73 78.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.0e-22 110.9 81 70.4
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 9.6e-21 104.4 60 83.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 6.9e-19 98.2 122 45.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.5e-18 95.5 54 81.5
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.3e-17 94.0 82 59.8
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.2e-15 87.4 45 88.9
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 6.0e-15 85.1 48 75.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.3e-13 79.3 72 55.6
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.9e-09 66.2 62 61.3
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.4e-08 63.2 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.1e-07 60.1 69 55.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 6.0e-07 58.5 39 64.1
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.8e-06 57.0 169 25.4


User provided reference genes

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