Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 1.5e-109 399.4 192 100.0
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 4.2e-43 178.7 162 61.7
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 7.2e-43 177.9 167 60.5
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 9.4e-35 151.0 157 55.4
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 3.5e-29 132.5 206 45.1
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 5.9e-29 131.7 223 43.5
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 1.5e-27 127.1 101 70.3
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.7e-23 112.5 169 44.4
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 9.1e-22 107.8 72 76.4
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 3.8e-20 102.4 50 96.0
Nitab4.5_0001249g0070 Nicotiana tabacum HOM05D008016 ORTHO05D010588 6.6e-20 101.7 63 79.4
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 1.5e-19 100.5 50 92.0
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 7.2e-19 98.2 78 65.4
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.6e-18 97.1 93 64.5
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.1e-18 96.7 50 90.0
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 6.1e-18 95.1 50 90.0
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 3.0e-17 92.8 172 38.4
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 4.0e-17 92.4 178 38.2
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.8e-17 91.7 70 68.6
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 8.9e-17 91.3 56 80.4
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 7.5e-16 88.2 62 69.4
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.8e-16 87.8 72 63.9
arahy.Tifrunner.gnm1.ann1.VZYH4A Arachis hypogaea HOM05D008016 ORTHO05D010588 1.7e-15 87.0 61 70.5
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 1.7e-15 87.0 61 70.5
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 3.7e-15 85.9 62 69.4
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.3e-15 85.1 63 69.8
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 8.3e-15 84.7 61 68.9
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.8e-14 83.6 92 57.6
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 3.1e-14 82.8 67 67.2
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 5.4e-14 82.0 64 68.8
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 9.2e-14 81.3 95 55.8
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 9.2e-14 81.3 95 55.8
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.5e-13 79.3 63 68.3
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.8e-12 75.9 146 36.3
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 1.1e-11 74.3 38 89.5
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.5e-11 73.9 66 62.1
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 3.3e-11 72.8 36 91.7
DCAR_024575 Daucus carota HOM05D008354 ORTHO05D010055 7.3e-11 71.6 39 82.1
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 2.1e-10 70.1 63 63.5
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 3.6e-10 69.3 185 35.7
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 4.7e-10 68.9 46 71.7
C02p28730 Brassica napus HOM05D008016 ORTHO05D010588 6.1e-10 68.6 32 93.8
Nitab4.5_0006096g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 1.4e-09 67.4 32 100.0
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 2.3e-09 66.6 41 80.5
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 3.1e-09 66.2 38 84.2
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 4.0e-09 65.9 31 100.0
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.0e-09 65.9 113 42.5
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 8.9e-09 64.7 33 93.9
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 8.9e-09 64.7 33 93.9
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 8.9e-09 64.7 33 93.9
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 8.9e-09 64.7 33 93.9
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 8.9e-09 64.7 33 93.9
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.2e-08 64.3 31 96.8
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 1.5e-08 63.9 33 90.9
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.0e-08 63.5 33 90.9
Nitab4.5_0008813g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 2.0e-08 63.5 31 93.5
Peaxi162Scf00475g00112 Petunia axillaris HOM05D007952 ORTHO05D004271 2.0e-08 63.5 31 90.3
CsaV3_UNG196490 Cucumis sativus L. HOM05D008016 ORTHO05D010588 2.6e-08 63.2 62 53.2
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 2.6e-08 63.2 31 96.8
Peaxi162Scf00136g00086 Petunia axillaris HOM05D007952 ORTHO05D004271 3.4e-08 62.8 31 96.8
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 4.4e-08 62.4 31 93.5
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 4.4e-08 62.4 39 79.5
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.4e-08 62.4 52 67.3
Lalb_Chr17g0346961 Lupinus albus HOM05D008016 ORTHO05D010588 7.5e-08 61.6 34 85.3
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 9.8e-08 61.2 33 90.9
CAN.G1346.2 Capsicum annuum HOM05D001966 ORTHO05D010588 1.3e-07 60.8 33 87.9
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 1.7e-07 60.5 74 50.0
Aa31csc553G20 Aethionema arabicum HOM05D010190 ORTHO05D021180 2.2e-07 60.1 38 76.3
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 2.2e-07 60.1 28 100.0
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 2.9e-07 59.7 28 92.9
Lsat_1_v5_gn_4_147840 Lactuca sativa HOM05D008016 ORTHO05D010588 2.9e-07 59.7 28 92.9
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 2.9e-07 59.7 28 92.9
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 3.7e-07 59.3 33 87.9
Glyma.19G187300 Glycine max HOM05D007952 ORTHO05D004271 3.7e-07 59.3 31 90.3
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 8.3e-07 58.2 28 89.3
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 8.3e-07 58.2 28 89.3
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 8.3e-07 58.2 28 89.3
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 8.3e-07 58.2 28 89.3
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 8.3e-07 58.2 28 89.3
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 8.3e-07 58.2 28 89.3
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 1.1e-06 57.8 35 80.0
SEGI_28289 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.1e-06 57.8 90 38.9
Solyc03g150126.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.4e-06 57.4 87 43.7
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 1.4e-06 57.4 171 31.0
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 3.2e-06 56.2 64 51.6
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 4.1e-06 55.8 33 84.8
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 4.1e-06 55.8 68 47.1
Sed0006095 Sechium edule HOM05D010190 ORTHO05D010055 7.0e-06 55.1 31 80.6
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 9.2e-06 54.7 31 80.6
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 9.2e-06 54.7 33 84.8


User provided reference genes

Program Settings