Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 8.1e-100 367.1 187 100.0
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 2.4e-75 285.8 193 76.2
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 5.9e-74 281.2 191 75.4
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 7.4e-69 264.2 174 75.9
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 9.7e-69 263.8 171 77.8
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.8e-68 262.3 190 72.1
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 8.2e-68 260.8 171 77.2
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.1e-67 260.4 190 72.1
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 1.4e-67 260.0 190 72.1
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-67 260.0 190 72.1
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.8e-67 259.6 189 70.4
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 5.3e-67 258.1 191 70.7
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 7.0e-67 257.7 190 71.6
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 9.1e-67 257.3 176 75.6
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.2e-66 256.9 188 71.8
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.2e-66 256.9 191 71.2
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.5e-66 256.5 187 71.1
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 1.5e-66 256.5 190 71.1
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 2.0e-66 256.1 188 70.7
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 3.5e-66 255.4 182 72.0
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 3.5e-66 255.4 173 75.1
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 5.9e-66 254.6 192 70.8
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.9e-66 254.6 187 70.6
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.9e-66 254.6 187 70.6
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 5.9e-66 254.6 172 73.3
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 5.9e-66 254.6 193 69.4
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 7.7e-66 254.2 195 69.7
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.0e-65 253.8 192 69.8
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 1.3e-65 253.4 190 70.0
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.7e-65 253.1 177 73.4
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 1.7e-65 253.1 174 73.6
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.7e-65 253.1 190 71.1
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 3.8e-65 251.9 172 73.8
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 5.0e-65 251.5 171 76.0
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 6.5e-65 251.1 194 68.6
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 8.5e-65 250.8 193 67.9
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 1.5e-64 250.0 193 67.9
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 3.2e-64 248.8 190 68.4
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 3.2e-64 248.8 172 72.7
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 3.2e-64 248.8 172 72.7
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 4.2e-64 248.4 190 68.9
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 4.2e-64 248.4 172 72.7
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.2e-64 247.7 191 69.1
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.2e-64 247.7 191 69.1
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.2e-64 247.7 191 69.1
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 1.6e-63 246.5 197 68.0
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 2.1e-63 246.1 188 68.1
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.1e-63 246.1 194 66.5
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.7e-63 245.7 177 71.2
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 6.1e-63 244.6 176 70.5
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 8.0e-63 244.2 172 71.5
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 8.0e-63 244.2 170 71.2
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 1.0e-62 243.8 183 70.5
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.4e-62 243.4 197 66.5
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.8e-62 243.0 173 69.9
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 2.3e-62 242.7 173 69.9
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 2.3e-62 242.7 165 72.7
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 4.0e-62 241.9 170 72.9
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.0e-62 241.9 178 69.7
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 8.8e-62 240.7 178 68.0
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.1e-61 240.4 203 64.5
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.1e-61 240.4 177 68.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 1.1e-61 240.4 170 72.4
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 3.3e-61 238.8 171 71.9
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 9.7e-61 237.3 192 64.6
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 1.3e-60 236.9 192 64.6
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.7e-60 236.5 171 70.2
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 2.2e-60 236.1 173 70.5
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 2.8e-60 235.7 182 65.9
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 1.1e-59 233.8 195 64.1
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 1.1e-59 233.8 173 69.9
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.8e-59 233.0 185 65.9
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 2.4e-59 232.6 196 64.3
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 3.1e-59 232.3 189 67.2
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 5.3e-59 231.5 195 63.6
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 5.3e-59 231.5 195 63.6
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 5.3e-59 231.5 195 63.6
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 7.0e-59 231.1 188 64.9
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 9.1e-59 230.7 179 67.0
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.2e-58 230.3 199 62.3
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 5.9e-58 228.0 196 61.7
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 5.9e-58 228.0 176 64.2
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.9e-58 228.0 183 65.6
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.0e-57 227.3 185 63.8
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 1.0e-57 227.3 171 68.4
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.3e-57 226.9 163 70.6
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 2.2e-57 226.1 198 63.1
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 2.9e-57 225.7 201 62.2
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 5.0e-57 224.9 198 60.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 5.0e-57 224.9 198 60.6
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.1e-55 219.5 182 63.2
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.1e-55 219.5 182 63.2
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 3.6e-55 218.8 172 65.1
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.8e-54 216.5 192 62.5
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.7e-52 209.9 178 60.1
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 5.4e-51 204.9 153 68.6
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.2e-47 193.7 149 68.5
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.6e-45 186.0 155 63.2
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 3.7e-44 182.2 185 58.4
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 2.9e-41 172.6 142 63.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 5.0e-41 171.8 172 51.2
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.3e-38 162.9 178 47.2
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.3e-36 157.1 171 48.0
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 2.0e-34 149.8 104 72.1
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.7e-34 149.4 178 50.6
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 5.9e-34 148.3 171 46.2
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.9e-33 145.6 104 70.2
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 6.8e-30 134.8 95 67.4
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.8e-26 121.3 174 42.5
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 7.8e-26 121.3 117 52.1
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.4e-19 100.5 131 43.5
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 1.6e-15 87.0 67 62.7
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.0e-09 66.2 45 64.4
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.9e-08 63.5 47 59.6
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 2.1e-07 60.1 51 66.7


User provided reference genes

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