Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 0.0e+00 1278.1 645 100.0
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 0.0e+00 1204.9 643 94.1
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 0.0e+00 1085.9 654 84.3
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 0.0e+00 1085.9 654 84.3
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.0e-299 1031.9 653 80.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.5e-297 1025.8 655 80.3
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 7.0e-276 953.7 648 75.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 5.1e-226 788.1 640 64.8
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.0e-221 773.9 650 62.5
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.0e-221 773.9 598 67.6
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 6.0e-219 764.6 644 62.4
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.3e-218 762.7 647 62.4
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 5.1e-218 761.5 614 65.1
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.5e-217 760.0 639 63.1
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 3.3e-217 758.8 663 62.3
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 4.3e-217 758.4 656 59.6
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.8e-216 755.7 639 63.2
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.4e-215 753.4 658 60.3
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.4e-215 752.7 612 64.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 6.9e-215 751.1 639 62.0
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.5e-214 750.0 594 65.2
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 2.6e-214 749.2 646 60.5
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 7.6e-214 747.7 662 59.7
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 7.6e-214 747.7 651 60.5
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.9e-213 745.7 656 61.0
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 8.5e-213 744.2 662 59.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 8.5e-213 744.2 604 62.3
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.1e-212 743.8 663 59.1
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.5e-212 742.7 600 64.3
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 7.2e-212 741.1 657 61.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.6e-211 740.0 658 60.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 2.1e-211 739.6 654 59.6
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 4.6e-211 738.4 650 60.3
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 4.6e-211 738.4 656 60.1
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 6.1e-211 738.0 661 60.8
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.9e-210 735.3 610 62.1
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 6.7e-210 734.6 673 57.7
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.9e-209 733.0 666 59.0
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 2.8e-208 729.2 599 64.3
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 4.8e-208 728.4 656 59.6
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.4e-207 726.1 641 61.2
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.9e-207 724.5 643 60.7
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.5e-206 723.4 665 58.2
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.4e-206 722.2 641 60.2
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.2e-205 719.5 640 59.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.9e-205 719.2 641 59.9
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.0e-205 718.4 641 60.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.5e-204 716.1 662 59.8
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 5.1e-202 708.4 644 60.7
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 5.1e-202 708.4 519 66.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.5e-201 706.8 667 57.4
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.2e-198 697.2 599 60.6
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 2.6e-198 696.0 599 63.3
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 3.4e-198 695.7 593 61.0
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.4e-198 695.7 665 57.6
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.9e-197 692.6 665 57.4
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.4e-196 690.3 593 60.7
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.2e-195 687.2 658 55.9
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.1e-195 686.4 587 60.6
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 2.7e-195 686.0 619 59.8
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.7e-192 676.8 662 55.0
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 3.7e-192 675.6 655 57.1
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.8e-191 673.3 655 56.3
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.2e-190 670.6 652 55.8
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.6e-190 670.2 655 56.6
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.9e-189 666.0 663 55.2
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 4.7e-187 658.7 583 60.0
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.6e-185 652.9 624 56.9
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.7e-184 650.2 656 54.1
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 4.8e-184 648.7 668 53.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 3.5e-182 642.5 743 49.8
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.5e-180 637.1 742 49.2
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.1e-179 633.3 494 65.2
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.4e-178 630.6 670 52.4
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.4e-178 630.6 652 53.8
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 6.8e-178 628.2 633 55.8
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.2e-177 627.5 528 60.2
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 3.4e-177 625.9 522 60.9
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.2e-176 623.2 602 55.3
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.7e-176 622.5 661 54.2
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 4.8e-176 622.1 665 52.2
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.1e-175 620.9 605 55.4
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 4.1e-175 619.0 528 60.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 5.9e-174 615.1 519 59.7
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 7.7e-174 614.8 667 53.1
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.7e-173 613.6 666 52.4
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.1e-172 610.9 613 54.6
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.9e-172 610.1 616 53.9
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 4.2e-172 609.0 592 55.1
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.6e-171 607.1 655 51.5
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.1e-171 606.7 653 51.8
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 8.0e-171 604.7 668 51.2
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.4e-170 604.0 638 53.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 3.4e-169 599.4 678 50.6
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 7.5e-169 598.2 649 51.2
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 9.8e-169 597.8 625 53.3
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-168 597.4 649 51.0
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 3.7e-168 595.9 659 50.5
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.0e-166 590.1 626 51.8
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.7e-165 587.0 532 57.5
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 8.6e-165 584.7 644 51.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.5e-164 583.9 541 57.5
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 3.3e-164 582.8 656 51.4
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.8e-163 579.7 624 51.4
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-163 579.3 643 50.9
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.7e-163 578.9 643 50.9
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.4e-162 577.4 573 53.9
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 2.3e-162 576.6 550 56.0
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.0e-162 575.9 443 66.4
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 5.7e-161 572.0 655 50.1
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 9.8e-161 571.2 655 50.1
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.2e-158 564.3 624 48.9
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 5.9e-158 562.0 647 49.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.2e-155 554.3 668 48.7
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 3.9e-149 532.7 547 51.9
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 3.1e-146 523.1 618 46.8
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.6e-145 520.0 638 47.0
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 2.4e-143 513.5 512 52.7
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.1e-138 498.0 623 46.9
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.2e-121 441.4 639 41.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.5e-121 441.0 565 44.1
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.3e-117 427.9 625 45.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 2.0e-97 360.9 260 66.5
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.9e-96 357.1 568 38.2
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.3e-93 347.4 569 38.5
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 3.3e-92 343.6 444 42.3
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 8.2e-91 339.0 607 35.4
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.6e-86 324.7 261 62.1
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.3e-83 315.1 415 42.2
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 4.8e-83 313.2 323 53.3
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 7.2e-79 299.3 218 66.5
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 5.3e-74 283.1 325 48.0
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.7e-48 198.4 135 69.6
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.0e-45 189.1 251 46.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 7.1e-10 70.1 101 37.6
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 1.5e-07 62.4 132 31.8
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 3.3e-07 61.2 51 58.8


User provided reference genes

Program Settings