Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 6.0e-115 417.5 212 100.0
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.4e-76 289.3 220 72.7
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 5.5e-68 261.5 215 65.6
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 3.9e-66 255.4 238 62.6
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 9.4e-28 127.9 226 38.5
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 2.7e-27 126.3 225 38.7
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 6.8e-26 121.7 226 38.1
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.5e-25 120.6 227 39.2
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 2.0e-25 120.2 227 38.8
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 7.5e-25 118.2 225 39.1
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 6.3e-24 115.2 225 38.2
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 7.0e-23 111.7 226 40.3
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 5.9e-22 108.6 219 37.9
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 7.7e-22 108.2 219 37.9
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 1.3e-21 107.5 226 38.1
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.7e-21 107.1 223 37.2
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 1.1e-20 104.4 224 36.6
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.5e-20 104.0 229 36.2
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.5e-20 104.0 223 36.8
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 1.9e-20 103.6 209 38.3
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 3.0e-18 96.3 236 34.3
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 1.2e-17 94.4 227 36.1
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 2.2e-16 90.1 236 34.3
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 2.2e-16 90.1 227 33.5
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 3.1e-15 86.3 215 34.9
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 4.1e-15 85.9 223 33.2
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 5.4e-15 85.5 236 31.4
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.2e-14 84.3 213 34.3
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.6e-14 84.0 223 33.6
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 1.6e-14 84.0 238 32.8
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.6e-14 84.0 221 33.9
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.6e-14 84.0 224 34.4
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.7e-14 83.2 232 33.2
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.7e-14 83.2 232 33.2
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 3.5e-14 82.8 81 55.6
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 4.5e-14 82.4 235 34.9
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 7.7e-14 81.6 226 35.0
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 7.7e-14 81.6 241 31.5
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 7.7e-14 81.6 212 33.0
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 7.7e-14 81.6 278 29.1
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 1.7e-13 80.5 249 32.9
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.7e-13 80.5 211 34.1
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 2.9e-13 79.7 228 32.0
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 2.9e-13 79.7 217 37.8
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 3.8e-13 79.3 222 33.3
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 5.0e-13 79.0 222 33.3
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 5.0e-13 79.0 210 33.3
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 6.6e-13 78.6 209 33.5
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 6.6e-13 78.6 235 32.3
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 8.6e-13 78.2 223 30.9
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 1.1e-12 77.8 208 33.7
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.5e-12 77.4 107 47.7
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.5e-12 77.4 107 47.7
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 1.9e-12 77.0 211 34.6
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 4.3e-12 75.9 269 30.1
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 4.3e-12 75.9 213 31.9
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 5.6e-12 75.5 223 32.3
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 5.6e-12 75.5 211 29.4
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 5.6e-12 75.5 227 32.2
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 5.6e-12 75.5 215 34.4
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 5.6e-12 75.5 261 30.7
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 7.3e-12 75.1 264 28.0
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 7.3e-12 75.1 223 34.1
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 7.3e-12 75.1 225 34.2
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 7.3e-12 75.1 225 34.2
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 7.3e-12 75.1 242 28.9
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 9.5e-12 74.7 218 31.2
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.2e-11 74.3 225 32.9
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 1.2e-11 74.3 245 28.6
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 1.6e-11 73.9 252 29.8
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 1.6e-11 73.9 228 33.3
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 2.1e-11 73.6 224 31.7
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 4.7e-11 72.4 211 32.7
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.7e-11 72.4 253 30.0
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.7e-11 72.4 262 29.0
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 8.0e-11 71.6 260 29.2
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 8.0e-11 71.6 208 32.7
SHI18549 Sapria himalayana HOM05D003759 ORTHO05D004149 8.0e-11 71.6 197 31.5
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 8.0e-11 71.6 216 32.4
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.4e-10 70.9 225 32.0
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 2.3e-10 70.1 264 29.2
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 3.0e-10 69.7 226 30.1
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 3.0e-10 69.7 214 32.2
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 5.2e-10 68.9 220 32.7
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 6.8e-10 68.6 282 29.8
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 6.8e-10 68.6 223 30.5
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 6.8e-10 68.6 208 32.7
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 8.9e-10 68.2 266 27.8
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.2e-09 67.8 207 30.0
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.5e-09 67.4 202 30.2
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.5e-09 67.4 279 27.2
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 1.5e-09 67.4 270 25.6
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 2.0e-09 67.0 263 29.3
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.0e-09 67.0 225 32.4
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 2.0e-09 67.0 223 29.6
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 2.6e-09 66.6 224 31.7
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 2.6e-09 66.6 207 30.0
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 3.4e-09 66.2 207 31.4
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 5.7e-09 65.5 219 30.1
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 5.7e-09 65.5 227 32.6
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 5.7e-09 65.5 210 30.0
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 7.5e-09 65.1 244 31.6
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 9.8e-09 64.7 202 30.7
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 9.8e-09 64.7 206 34.5
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 9.8e-09 64.7 258 29.1
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 1.3e-08 64.3 216 31.9
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 2.9e-08 63.2 266 28.6
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 2.9e-08 63.2 268 27.2
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 3.7e-08 62.8 208 31.2
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 4.9e-08 62.4 268 27.6
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 4.9e-08 62.4 72 55.6
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 4.9e-08 62.4 265 26.4
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 4.9e-08 62.4 213 31.0
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 6.4e-08 62.0 76 48.7
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 6.4e-08 62.0 69 50.7
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 8.3e-08 61.6 208 30.8
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.1e-07 61.2 222 29.3
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-07 61.2 205 30.2
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-07 61.2 205 30.2
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 1.1e-07 61.2 223 31.8
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 1.1e-07 61.2 218 28.9
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 1.4e-07 60.8 215 30.2
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 1.4e-07 60.8 213 33.8
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-07 60.8 205 30.7
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 1.4e-07 60.8 205 30.7
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.8e-07 60.5 207 27.5
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 1.8e-07 60.5 262 29.4
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.4e-07 60.1 156 34.0
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 2.4e-07 60.1 206 27.7
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 2.4e-07 60.1 271 28.8
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 4.1e-07 59.3 205 31.2
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.1e-07 59.3 310 27.7
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.1e-07 59.3 310 27.7
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 4.1e-07 59.3 215 28.4
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 5.4e-07 58.9 205 31.2
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 7.0e-07 58.5 206 30.1
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 7.0e-07 58.5 215 29.8
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 9.2e-07 58.2 217 30.0
SEGI_22308 Sequoiadendron giganteum HOM05D024907 ORTHO05D030594 1.2e-06 57.8 221 30.8
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 1.2e-06 57.8 223 28.3
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 1.6e-06 57.4 109 40.4
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 2.7e-06 56.6 222 27.9
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 3.5e-06 56.2 214 29.4
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 4.6e-06 55.8 205 32.2
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 5.9e-06 55.5 269 26.4
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 5.9e-06 55.5 269 27.1


User provided reference genes

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