Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.7e-123 446.0 228 100.0
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 9.5e-119 430.3 228 95.2
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 2.1e-118 429.1 228 96.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.1e-103 380.2 227 87.7
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 6.2e-102 374.4 230 85.7
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.8e-101 372.9 228 80.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.8e-101 372.9 226 83.2
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.1e-101 372.1 228 79.8
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.4e-100 368.6 228 78.9
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 6.4e-99 364.4 228 79.4
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-98 363.2 226 79.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.9e-98 362.8 221 81.4
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.2e-97 360.1 222 81.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.7e-97 359.0 222 81.1
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 6.0e-97 357.8 226 77.0
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 7.9e-97 357.5 228 78.5
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 7.9e-97 357.5 218 82.1
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 225 77.8
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.0e-96 357.1 226 77.0
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 219 81.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.8e-96 356.3 226 77.4
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 77.0
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.9e-96 355.1 217 81.6
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 6.7e-96 354.4 217 81.6
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 6.7e-96 354.4 222 79.7
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-95 353.6 218 80.3
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-95 353.2 217 81.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.5e-95 353.2 226 77.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.9e-95 352.8 228 77.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.9e-95 352.8 222 79.3
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.3e-95 352.1 220 77.3
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 4.3e-95 351.7 219 79.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 77.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.6e-95 351.3 218 79.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 7.4e-95 350.9 220 77.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 7.4e-95 350.9 228 75.4
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 77.0
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 9.6e-95 350.5 228 76.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 9.6e-95 350.5 226 76.5
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.3e-94 350.1 228 74.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.1e-94 349.4 228 75.4
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.7e-94 348.6 226 77.0
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.7e-94 348.6 220 77.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-93 345.9 228 72.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.3e-93 344.7 228 73.7
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.0e-93 344.0 228 72.8
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.0e-92 342.8 228 74.1
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 4.5e-92 341.7 222 73.9
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 5.8e-92 341.3 228 73.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 7.6e-92 340.9 215 76.3
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.0e-91 340.5 228 74.1
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.3e-91 340.1 224 74.1
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-91 339.7 222 73.0
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.9e-91 339.0 228 72.4
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 3.8e-91 338.6 232 74.6
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.8e-91 338.6 228 71.9
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.8e-91 338.6 216 78.2
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.4e-91 337.8 228 72.8
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 6.4e-91 337.8 228 72.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.4e-91 337.8 226 73.5
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.4e-91 337.8 217 75.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 6.4e-91 337.8 214 78.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-90 337.0 226 72.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.4e-90 336.7 228 72.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.9e-90 336.3 228 73.7
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 2.5e-90 335.9 226 71.7
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.5e-90 335.9 224 73.7
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.2e-90 335.1 226 73.5
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 4.2e-90 335.1 228 73.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.5e-90 334.7 220 73.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-90 334.7 226 71.7
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 7.1e-90 334.3 219 73.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 7.1e-90 334.3 227 73.1
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 9.3e-90 334.0 242 70.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-89 333.6 220 74.5
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-89 333.6 220 74.5
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.6e-89 333.2 219 75.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-89 332.8 219 72.6
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 7.9e-89 330.9 215 75.3
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 7.9e-89 330.9 203 82.3
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.0e-88 330.5 222 72.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.8e-88 329.7 225 72.9
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.8e-88 329.7 225 72.9
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 3.0e-88 328.9 218 72.5
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 5.1e-88 328.2 222 72.1
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 6.7e-88 327.8 222 72.1
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 6.7e-88 327.8 218 73.4
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 1.5e-87 326.6 213 74.6
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.5e-87 326.6 214 75.7
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.5e-87 325.9 225 72.4
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.5e-87 325.9 222 71.6
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.5e-87 325.9 210 75.2
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.5e-87 325.9 214 74.3
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.5e-87 325.9 214 74.3
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.3e-87 325.5 225 73.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.8e-86 322.4 218 75.2
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 4.8e-86 321.6 222 73.0
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 6.2e-86 321.2 225 69.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 8.2e-86 320.9 213 73.7
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.4e-85 320.1 219 72.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-85 319.7 217 74.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.1e-85 318.9 204 76.0
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 6.9e-85 317.8 205 74.1
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.0e-85 317.4 213 73.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.5e-84 316.6 225 69.3
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.5e-84 316.6 204 76.5
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.3e-83 313.5 225 68.0
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-83 313.2 220 69.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.2e-83 312.8 225 68.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.9e-83 311.6 205 73.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.5e-83 311.2 214 72.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.1e-82 310.5 243 66.7
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.4e-82 310.1 208 75.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-82 310.1 253 65.6
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 3.2e-82 308.9 204 73.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 4.2e-82 308.5 202 75.2
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-81 305.1 209 71.3
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.6e-81 305.1 209 71.3
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.6e-81 305.1 226 68.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.0e-80 303.9 224 69.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.9e-79 299.7 209 69.9
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.3e-79 298.9 204 71.1
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.3e-79 298.9 211 69.7
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.3e-79 298.5 203 71.4
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 9.0e-77 290.8 213 66.2
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.5e-76 290.0 194 72.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 5.9e-76 288.1 211 64.0
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 5.0e-75 285.0 202 69.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.2e-74 282.3 211 69.7
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 5.5e-74 281.6 198 67.7
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.8e-72 276.6 228 65.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.3e-72 276.2 216 64.4
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.7e-72 274.6 186 72.6
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.4e-71 271.2 220 65.9
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.7e-70 270.0 175 74.9
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 6.3e-70 268.1 224 62.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.4e-69 266.2 214 65.9
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.3e-64 249.6 160 75.6
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.1e-63 247.3 231 57.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 2.2e-62 243.0 206 61.7
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.8e-62 242.7 159 73.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.8e-62 242.7 223 60.5
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.1e-61 240.7 213 58.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-61 239.2 159 72.3
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.6e-60 236.1 214 57.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 3.5e-60 235.7 152 77.6
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.1e-58 230.7 214 56.5
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 7.2e-58 228.0 196 59.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.1e-57 224.9 219 53.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.9e-56 222.2 214 54.7
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.7e-56 221.5 216 56.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.0e-55 219.9 186 62.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.8e-54 216.1 152 73.0
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.8e-54 215.3 215 57.2
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.9e-52 208.4 208 51.4
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.5e-42 176.4 238 44.5
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.8e-40 168.3 200 53.0
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-38 162.2 117 72.6
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 8.3e-38 161.4 240 41.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.0e-37 158.3 224 45.1
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-36 156.8 111 67.6
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.9e-35 152.9 104 68.3
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 3.6e-33 146.0 155 49.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 8.0e-33 144.8 94 75.5
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.9e-30 135.6 114 64.9
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 8.3e-30 134.8 119 64.7
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.5e-26 124.0 78 76.9
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.3e-26 122.5 249 32.5
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.0e-20 103.6 71 70.4
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 6.6e-19 98.6 83 65.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-16 90.9 73 61.6
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.2e-13 79.7 202 31.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 7.3e-10 68.6 105 43.8
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 4.4e-07 59.3 77 49.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.4e-07 59.3 40 55.0


User provided reference genes

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