Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 0.0e+00 1090.5 535 100.0
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.5e-297 1024.2 535 92.7
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.3e-296 1022.3 535 92.7
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 7.3e-295 1016.5 535 92.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.0e-280 968.0 537 87.2
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.9e-279 965.3 534 87.1
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 7.4e-279 963.4 535 86.4
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 9.6e-279 963.0 535 85.8
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.6e-278 962.2 535 85.6
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.6e-278 961.1 537 86.6
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.8e-277 958.7 535 84.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 4.0e-277 957.6 535 84.9
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 4.5e-276 954.1 535 84.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 4.5e-276 954.1 535 85.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 9.9e-276 953.0 535 85.0
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 84.9
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 84.5
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.9e-274 948.7 535 84.3
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.2e-274 947.6 535 85.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.2e-273 946.0 535 84.3
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.1e-273 945.3 535 84.3
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.7e-273 944.9 535 83.9
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 6.0e-273 943.7 535 84.1
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.0e-272 943.0 535 83.6
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 83.9
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 84.7
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 84.1
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.9e-272 941.0 529 85.3
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 84.1
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 6.7e-272 940.3 535 84.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.7e-272 939.9 535 83.4
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 83.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.3e-271 937.9 542 83.2
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 5.6e-271 937.2 535 83.7
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 9.6e-271 936.4 535 83.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 9.6e-271 936.4 536 83.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.3e-270 936.0 535 83.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.1e-270 935.3 535 83.2
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 84.1
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 84.1
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.8e-270 934.1 535 83.2
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 8.1e-270 933.3 535 83.4
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.1e-269 932.9 540 82.6
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.8e-269 932.2 536 84.0
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 82.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 4.0e-269 931.0 535 82.8
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 4.0e-269 931.0 535 82.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 5.3e-269 930.6 535 82.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.2e-268 929.5 531 83.4
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.2e-268 929.5 535 83.4
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.8e-268 927.2 534 83.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 7.6e-268 926.8 535 82.6
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.2e-267 925.2 535 82.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.4e-266 922.5 535 81.7
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.4e-266 922.5 535 81.9
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.4e-266 922.5 535 83.2
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 3.2e-266 921.4 535 82.1
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 5.5e-266 920.6 529 81.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.2e-265 919.5 535 80.7
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 3.5e-265 917.9 535 81.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.6e-265 917.5 535 81.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 6.0e-265 917.1 529 81.5
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.8e-264 915.6 536 81.7
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.8e-264 915.6 529 81.7
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.3e-264 915.2 530 81.9
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 5.1e-264 914.1 535 81.5
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 5.7e-263 910.6 529 81.3
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 7.4e-263 910.2 536 80.4
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 9.6e-263 909.8 536 80.4
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-261 906.4 536 82.3
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 80.8
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.8e-261 905.6 535 81.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.4e-261 905.2 535 80.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 79.8
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 80.6
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 2.0e-260 902.1 536 81.0
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 4.5e-260 901.0 535 80.2
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 79.1
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 7.6e-260 900.2 536 80.8
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.2
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 2.2e-259 898.7 496 87.7
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.9e-259 898.3 528 80.5
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.8e-259 897.9 536 80.6
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.0e-259 897.5 536 79.9
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 6.5e-259 897.1 535 80.2
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-258 896.3 536 80.0
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.5e-258 895.2 536 80.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 5.5e-258 894.0 535 79.8
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 7.2e-258 893.6 535 79.8
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 7.2e-258 893.6 534 79.4
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 7.2e-258 893.6 533 79.2
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 3.6e-257 891.3 533 79.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.6e-257 891.0 535 79.6
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 4.6e-257 891.0 531 79.8
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 6.1e-257 890.6 536 80.4
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 80.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.3e-256 888.6 529 78.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 3.0e-256 888.3 535 80.0
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.1e-256 887.5 537 77.5
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 9.7e-255 883.2 535 79.3
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.1e-253 879.8 531 78.0
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.2e-252 876.3 550 76.9
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.6e-252 875.2 550 76.7
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.4e-252 874.8 682 65.8
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.1e-250 869.8 536 77.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.2e-249 866.3 528 78.4
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.6e-249 864.8 535 79.4
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 3.9e-248 861.3 499 83.2
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.8e-246 855.1 493 83.4
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 8.2e-246 853.6 528 77.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 2.4e-245 852.0 533 76.5
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.4e-242 842.8 666 65.8
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.7e-241 838.6 539 74.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 5.2e-232 807.7 559 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 4.4e-223 778.1 525 69.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.8e-223 776.9 527 69.3
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 5.9e-220 767.7 530 68.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.4e-216 756.5 532 68.2
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.4e-213 745.7 536 70.3
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.6e-209 731.9 535 63.9
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 7.5e-207 724.2 527 64.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.7e-206 723.0 441 80.5
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.8e-200 703.0 527 63.8
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 6.8e-200 701.0 404 81.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.1e-197 693.7 525 63.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.2e-188 663.7 374 83.7
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 7.3e-186 654.4 493 63.7
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.0e-184 648.7 495 67.7
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.8e-174 615.5 422 72.7
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.4e-165 587.0 710 49.4
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 7.4e-146 521.5 299 83.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 7.4e-138 495.0 545 50.1
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.2e-127 461.1 312 73.1
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.5e-117 427.6 537 46.0
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.7e-103 378.6 411 50.1
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.1e-100 369.0 260 69.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.3e-83 313.9 184 81.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 3.6e-68 263.5 148 85.1
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.9e-62 243.4 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 2.8e-44 184.1 140 65.0
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.0e-42 177.9 219 46.1
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.0e-38 165.6 95 82.1
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.8e-38 164.9 104 78.8
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.4e-35 155.2 103 73.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.7e-33 148.3 93 76.3
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.1e-19 102.4 89 56.2
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 9.1e-19 99.4 93 58.1
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 3.6e-15 87.4 46 87.0
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 4.4e-13 80.5 53 73.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.3e-12 79.0 45 80.0
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 2.2e-12 78.2 42 85.7
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 2.2e-12 78.2 42 85.7
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 9.1e-11 72.8 47 78.7
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.7e-09 68.6 78 59.0
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 41 70.7
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 41 70.7
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 41 70.7
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 8.0e-07 59.7 41 65.9
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 2.3e-06 58.2 208 26.4
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 5.2e-06 57.0 102 36.3
VMungo0540G1605 Vigna mungo HOM05D001661 ORTHO05D001575 5.2e-06 57.0 101 33.7


User provided reference genes

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