Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 1.5e-131 474.6 244 100.0
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 1.7e-98 364.8 248 77.4
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 1.5e-91 341.7 242 74.4
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.7e-74 285.0 240 62.1
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.2e-74 284.6 240 61.7
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 6.4e-74 283.1 240 61.7
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 5.5e-73 280.0 224 63.8
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 5.1e-71 273.5 231 61.0
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 8.7e-71 272.7 238 60.1
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 8.7e-71 272.7 230 62.6
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.1e-69 268.1 231 61.9
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 3.1e-68 264.2 235 57.4
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 6.9e-68 263.1 235 59.6
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.7e-66 258.5 210 62.4
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.2e-66 258.1 213 63.4
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 4.6e-64 250.4 245 58.4
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.0e-63 247.7 231 55.0
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 1.5e-62 245.4 231 54.5
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.5e-62 245.4 231 54.5
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 1.5e-62 245.4 232 55.6
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.5e-62 244.6 231 54.1
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 1.6e-61 241.9 243 58.4
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 8.2e-61 239.6 233 54.1
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 8.2e-61 239.6 231 54.5
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 1.5e-59 235.3 239 55.2
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 3.8e-58 230.7 234 55.1
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 8.5e-58 229.6 232 55.2
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 2.5e-57 228.0 138 81.2
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 3.2e-57 227.6 233 52.4
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 1.6e-56 225.3 250 52.0
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 2.1e-56 224.9 250 51.6
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 6.1e-56 223.4 207 55.1
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 5.1e-55 220.3 238 52.1
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 8.8e-55 219.5 228 52.6
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 7.4e-54 216.5 233 50.6
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 4.8e-53 213.8 227 52.9
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 2.4e-52 211.5 223 51.6
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 9.1e-52 209.5 224 54.5
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 9.1e-52 209.5 227 54.2
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 2.0e-51 208.4 245 50.2
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 5.9e-51 206.8 231 48.9
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 5.9e-51 206.8 223 51.1
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 3.8e-50 204.1 237 51.1
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 5.0e-50 203.8 243 48.1
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 3.2e-49 201.1 166 59.0
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 3.2e-49 201.1 234 51.3
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 3.2e-49 201.1 254 46.9
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 3.2e-49 201.1 225 48.0
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 5.5e-49 200.3 242 50.0
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 9.4e-49 199.5 234 50.0
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.6e-48 198.7 235 49.8
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.6e-48 198.7 235 49.8
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 1.6e-48 198.7 235 51.1
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 7.9e-48 196.4 234 48.3
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.0e-47 196.1 236 52.1
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.0e-47 196.1 234 50.4
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.8e-47 195.3 231 47.2
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.3e-47 194.9 231 47.2
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 3.9e-47 194.1 164 57.3
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 3.9e-47 194.1 234 48.3
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 3.9e-47 194.1 230 49.6
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.1e-46 192.6 230 48.3
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.6e-46 191.4 239 51.0
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.8e-44 185.3 238 46.6
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.8e-44 185.3 238 46.6
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 7.0e-44 183.3 238 46.2
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 9.1e-44 183.0 228 46.5
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.2e-43 182.6 235 48.5
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 2.0e-43 181.8 140 62.9
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 3.8e-42 177.6 223 49.3
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.5e-41 173.7 237 46.0
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 7.2e-41 173.3 243 43.6
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 6.1e-40 170.2 231 46.8
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.4e-39 169.1 160 53.1
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.4e-39 169.1 160 53.1
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-39 168.7 231 45.9
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-39 168.7 236 45.3
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 2.0e-38 165.2 161 51.6
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-37 161.4 236 46.2
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 9.1e-36 156.4 151 53.6
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 4.5e-35 154.1 249 40.6
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.9e-33 148.7 235 41.7
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.9e-33 148.7 236 42.4
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 4.0e-31 141.0 201 46.3
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 2.0e-30 138.7 171 48.5
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 2.6e-30 138.3 199 45.7
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-29 135.2 147 52.4
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-28 132.9 235 41.3
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.0e-26 126.3 249 39.0
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 1.5e-25 122.5 118 57.6
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 6.1e-24 117.1 84 65.5
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.4e-23 115.9 84 60.7
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.3e-21 109.4 85 61.2
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 2.4e-20 105.1 79 58.2
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 7.0e-20 103.6 219 41.1
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.5e-19 100.9 82 54.9
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.0e-18 99.8 97 53.6
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-18 99.0 86 54.7
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.7e-18 99.0 68 67.6
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.3e-18 98.6 93 51.6
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.9e-17 95.5 81 54.3
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.8e-16 91.7 79 54.4
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 4.7e-16 90.9 85 55.3
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 2.0e-14 85.5 80 52.5
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 7.5e-14 83.6 137 38.0
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 2.9e-13 81.6 67 61.2
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.9e-13 81.6 145 39.3
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 8.3e-13 80.1 227 35.7
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 4.1e-12 77.8 57 66.7
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 5.4e-12 77.4 186 28.5
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 1.6e-11 75.9 210 32.4
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 3.5e-11 74.7 77 49.4
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.6e-11 74.3 74 48.6
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.6e-11 74.3 74 48.6
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 5.0e-10 70.9 73 54.8
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.0e-10 70.9 73 54.8
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 8.6e-10 70.1 78 46.2
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-09 69.3 73 54.8
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.3e-09 67.8 73 54.8
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 5.6e-09 67.4 67 47.8
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 7.3e-09 67.0 64 51.6
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 6.2e-08 63.9 73 52.1
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.8e-07 62.4 205 25.4
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 2.3e-07 62.0 153 29.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.1e-07 61.6 193 29.0
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 6.8e-07 60.5 187 25.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 8.9e-07 60.1 163 26.4
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-06 59.3 73 52.1
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.5e-06 59.3 164 27.4
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 2.0e-06 58.9 142 29.6
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 2.0e-06 58.9 183 29.0
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 2.6e-06 58.5 107 29.0
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 2.6e-06 58.5 146 24.7
CDE06G2628 Ceratophyllum demersum HOM05D007063 ORTHO05D008822 3.4e-06 58.2 106 30.2
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 3.4e-06 58.2 205 25.9
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.4e-06 58.2 105 28.6
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.4e-06 57.8 73 50.7
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 4.4e-06 57.8 99 31.3
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 4.4e-06 57.8 181 26.5
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 5.8e-06 57.4 200 27.0
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 5.8e-06 57.4 200 25.5
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 5.8e-06 57.4 101 33.7
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 7.5e-06 57.0 73 50.7
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 9.8e-06 56.6 147 27.2


User provided reference genes

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