Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.9e-139 499.2 264 100.0
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.6e-99 365.9 275 75.6
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.4e-99 365.2 277 76.2
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-90 336.7 362 57.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-73 280.4 266 62.8
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.9e-60 234.6 251 59.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 8.3e-58 228.0 277 52.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.1e-56 223.4 251 56.6
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.3e-55 220.7 268 54.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.3e-55 220.7 268 54.5
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.3e-55 219.9 268 54.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 5.1e-55 218.8 278 54.3
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 8.6e-55 218.0 248 53.6
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.3e-54 216.1 257 54.9
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 5.6e-54 215.3 257 54.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 7.3e-54 214.9 257 54.1
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.3e-54 214.9 233 54.5
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 2.1e-53 213.4 255 54.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.1e-53 213.4 224 58.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.7e-53 212.2 186 65.6
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 6.2e-53 211.8 230 57.0
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.4e-52 210.7 186 65.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 4.0e-52 209.1 277 52.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.9e-52 208.0 234 54.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.2e-51 207.6 227 55.9
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.5e-51 207.2 233 53.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.4e-51 206.1 251 52.2
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.4e-51 205.7 277 53.1
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 4.4e-51 205.7 275 51.6
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 5.8e-51 205.3 281 50.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 9.9e-51 204.5 235 56.2
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.3e-50 204.1 191 64.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.7e-50 203.8 193 62.7
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.2e-50 203.4 267 49.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.9e-50 203.0 230 54.8
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.4e-50 201.8 277 52.0
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 8.4e-50 201.4 190 62.1
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.4e-49 199.9 272 51.8
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.4e-49 199.9 247 53.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.2e-49 199.5 259 53.3
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 4.1e-49 199.1 277 49.8
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 4.1e-49 199.1 279 51.3
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 4.1e-49 199.1 251 52.2
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.6e-48 197.2 262 50.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 6.0e-48 195.3 270 50.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.3e-47 194.1 247 51.4
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.7e-47 193.7 189 59.8
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.0e-47 193.0 190 61.1
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 6.6e-47 191.8 196 59.2
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 8.6e-47 191.4 213 55.9
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.5e-46 190.7 236 53.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.9e-46 190.3 215 56.3
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.5e-46 189.9 251 50.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 3.3e-46 189.5 215 56.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 9.6e-46 188.0 239 52.7
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.1e-45 186.8 274 48.5
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.8e-45 186.4 136 75.7
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.6e-45 186.0 266 48.5
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.7e-45 185.7 245 50.6
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.4e-44 183.3 187 61.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 3.1e-44 183.0 279 47.3
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 3.1e-44 183.0 189 60.3
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.1e-44 183.0 268 47.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 3.1e-44 183.0 268 47.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 5.2e-44 182.2 192 59.9
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 8.9e-44 181.4 268 47.4
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 8.9e-44 181.4 248 48.0
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.2e-43 181.0 196 56.1
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.5e-43 180.6 192 58.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.0e-43 180.3 248 48.8
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.6e-43 179.9 256 48.0
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.4e-43 179.5 187 59.9
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.4e-43 179.5 187 57.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 5.8e-43 178.7 232 50.4
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.3e-42 177.6 138 73.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.7e-42 177.2 187 57.8
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.7e-42 177.2 235 51.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 2.2e-42 176.8 262 47.7
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 3.8e-42 176.0 227 48.9
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 8.4e-42 174.9 277 45.1
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 8.4e-42 174.9 227 48.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-41 174.5 245 46.9
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.4e-41 173.3 250 46.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.2e-41 172.9 194 55.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.2e-41 172.9 279 45.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 4.2e-41 172.6 187 56.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.2e-41 172.6 186 57.5
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.2e-41 172.6 279 45.2
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 5.4e-41 172.2 237 49.4
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 7.1e-41 171.8 194 54.1
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 9.3e-41 171.4 187 54.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 9.3e-41 171.4 187 54.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 9.3e-41 171.4 189 56.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.2e-40 171.0 185 55.7
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.2e-40 171.0 197 55.3
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.2e-40 171.0 201 52.7
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.6e-40 170.6 191 56.5
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.1e-40 170.2 189 55.6
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.5e-40 169.5 227 48.0
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.5e-40 169.5 227 48.0
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.5e-38 164.1 192 56.2
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.9e-38 163.7 190 54.2
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.3e-38 162.9 268 45.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 4.3e-38 162.5 264 46.6
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.3e-38 161.8 272 47.8
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.6e-37 159.5 155 63.9
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.5e-35 154.1 211 48.8
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.0e-35 153.7 137 64.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 4.5e-35 152.5 189 51.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.8e-35 152.1 279 44.4
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 9.9e-35 151.4 272 40.1
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.3e-34 151.0 337 38.6
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-34 150.6 225 48.9
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.7e-34 150.6 262 44.3
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.1e-33 147.9 248 43.5
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.4e-33 147.5 263 43.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.9e-33 147.1 197 49.7
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 7.9e-32 141.7 96 80.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.5e-30 136.7 104 72.1
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 9.6e-30 134.8 104 70.2
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-29 134.0 105 71.4
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.6e-29 134.0 185 47.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 2.1e-29 133.7 149 57.0
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 2.1e-29 133.7 123 65.0
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.6e-29 132.9 137 60.6
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 8.1e-29 131.7 149 53.7
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.8e-28 130.6 108 66.7
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.1e-28 129.8 113 66.4
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 8.4e-26 121.7 162 50.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-24 117.5 217 42.9
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.5e-24 116.3 198 39.9
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.1e-22 111.3 84 73.8
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-20 104.8 86 69.8
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.8e-20 104.0 96 59.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 2.7e-16 90.1 104 51.9
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.1e-14 84.7 129 39.5
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-14 84.7 68 70.6
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.1e-14 84.7 201 35.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-14 84.3 58 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 6.3e-13 79.0 210 34.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 6.3e-13 79.0 57 75.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.1e-12 76.6 78 57.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 3.1e-12 76.6 188 33.0
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-10 71.2 44 84.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-10 70.5 83 57.8
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.9e-09 67.4 57 68.4
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.6e-08 64.3 49 73.5


User provided reference genes

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