Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021385 Sechium edule HOM05D000896 ORTHO05D000594 1.6e-132 476.1 237 100.0
ClCG02G017000 Citrullus lanatus HOM05D000896 ORTHO05D000594 2.3e-27 126.7 119 52.9
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 4.9e-17 92.4 153 34.6
Cfa004767 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.2e-16 89.7 129 38.8
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 7.1e-16 88.6 143 34.3
Sed0019902 Sechium edule HOM05D000896 ORTHO05D000594 1.2e-15 87.8 165 32.1
MELO3C010986.2 Cucumis melo HOM05D000896 ORTHO05D000594 3.5e-15 86.3 133 33.8
ClCG01G006250 Citrullus lanatus HOM05D000896 ORTHO05D000594 6.0e-15 85.5 167 32.3
Cfa004709 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.3e-14 84.3 179 31.8
Cfa004691 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.7e-14 84.0 177 32.8
Cfa004780 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.9e-14 82.8 150 35.3
CsaV3_2G029240 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.1e-13 81.3 140 31.4
Cfa004786 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.9e-13 80.5 129 38.0
Cfa004777 Carpinus fangiana HOM05D000896 ORTHO05D000594 2.5e-13 80.1 129 35.7
Sed0016322 Sechium edule HOM05D000896 ORTHO05D000594 2.5e-13 80.1 176 33.0
CsaV3_5G027980 Cucumis sativus L. HOM05D000896 ORTHO05D000594 4.3e-13 79.3 120 35.8
CsaV3_5G028430 Cucumis sativus L. HOM05D000896 ORTHO05D000594 4.3e-13 79.3 139 33.8
MELO3C010987.2 Cucumis melo HOM05D000896 ORTHO05D000594 5.6e-13 79.0 153 32.7
Cfa005673 Carpinus fangiana HOM05D000896 ORTHO05D000594 7.3e-13 78.6 129 36.4
CsaV3_5G027950 Cucumis sativus L. HOM05D000896 ORTHO05D000594 7.3e-13 78.6 120 34.2
CsaV3_5G028220 Cucumis sativus L. HOM05D000896 ORTHO05D000594 9.6e-13 78.2 136 33.8
MELO3C010943.2 Cucumis melo HOM05D000896 ORTHO05D000594 1.3e-12 77.8 126 33.3
Cfa004778 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.6e-12 77.4 185 31.9
CsaV3_2G028710 Cucumis sativus L. HOM05D000896 ORTHO05D000594 2.8e-12 76.6 116 34.5
QL03p038238 Quercus lobata HOM05D000896 ORTHO05D000594 2.8e-12 76.6 194 29.9
Cfa004784 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.8e-12 75.9 147 32.7
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 8.1e-12 75.1 107 38.3
CsaV3_5G028440 Cucumis sativus L. HOM05D000896 ORTHO05D000594 8.1e-12 75.1 140 33.6
Gohir.D13G231566 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-11 74.7 130 34.6
ClCG01G006230 Citrullus lanatus HOM05D000896 ORTHO05D000594 2.4e-11 73.6 127 34.6
Gohir.D11G314050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.4e-11 73.6 130 34.6
Gohir.D13G231533 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.4e-11 73.6 130 33.8
A04p24380 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-11 72.8 130 33.8
MELO3C005256.2 Cucumis melo HOM05D000896 ORTHO05D000594 4.0e-11 72.8 157 29.3
PGR004G0789 Punica granatum HOM05D000896 ORTHO05D000594 4.0e-11 72.8 135 37.0
MELO3C005306.2 Cucumis melo HOM05D000896 ORTHO05D000594 5.3e-11 72.4 116 33.6
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 6.9e-11 72.0 117 35.9
BraA04t17973Z Brassica rapa HOM05D000896 ORTHO05D000594 6.9e-11 72.0 130 34.6
Duzib177G0732 Durio zibethinus HOM05D000896 ORTHO05D000594 6.9e-11 72.0 127 33.1
Gohir.A07G201750 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.9e-11 72.0 125 34.4
Gohir.D02G053350 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.9e-11 72.0 125 32.8
A04p24520 Brassica napus HOM05D000896 ORTHO05D000594 9.0e-11 71.6 130 33.8
BolC4t27609H Brassica oleracea HOM05D000896 ORTHO05D000594 9.0e-11 71.6 128 32.8
ClCG08G015080 Citrullus lanatus HOM05D000896 ORTHO05D000594 9.0e-11 71.6 137 32.1
DCAR_013087 Daucus carota HOM05D000896 ORTHO05D000594 9.0e-11 71.6 132 34.8
ECA234G4629 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.2e-10 71.2 123 35.0
Gohir.A02G048201 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.0e-10 70.5 125 32.8
Gohir.A13G226166 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.0e-10 70.5 130 33.1
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 2.6e-10 70.1 131 32.8
C04p61210 Brassica napus HOM05D000896 ORTHO05D000594 2.6e-10 70.1 128 32.0
Gorai.005G056000 Gossypium raimondii HOM05D000896 ORTHO05D000594 2.6e-10 70.1 125 33.6
HanXRQChr16g0528671 Helianthus annuus HOM05D000896 ORTHO05D000594 2.6e-10 70.1 129 34.1
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 3.4e-10 69.7 131 32.8
MELO3C005283.2 Cucumis melo HOM05D000896 ORTHO05D000594 3.4e-10 69.7 155 29.7
Gohir.D02G050732 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.4e-10 69.7 125 33.6
QL02p098711 Quercus lobata HOM05D000896 ORTHO05D000594 3.4e-10 69.7 113 36.3
FAN08G1294 Fragaria x ananassa HOM05D000896 ORTHO05D000594 5.8e-10 68.9 123 36.6
Cpa.g.sc13.154 Carica papaya HOM05D000896 ORTHO05D000594 7.6e-10 68.6 170 32.4
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 7.6e-10 68.6 125 28.8
FAN13G2118 Fragaria x ananassa HOM05D000896 ORTHO05D000594 9.9e-10 68.2 123 36.6
FAN13G2868 Fragaria x ananassa HOM05D000896 ORTHO05D013425 9.9e-10 68.2 123 36.6
HanXRQChr16g0528541 Helianthus annuus HOM05D000896 ORTHO05D000594 9.9e-10 68.2 129 34.1
Sc09g0004960 Simmondsia chinensis HOM05D000896 ORTHO05D000594 9.9e-10 68.2 156 27.6
Glyma.01G113800 Glycine max HOM05D000896 ORTHO05D000594 1.3e-09 67.8 119 29.4
CAN.G1140.8 Capsicum annuum HOM05D000896 ORTHO05D000594 1.7e-09 67.4 115 35.7
Gohir.D02G050666 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.7e-09 67.4 125 32.8
Sc09g0005030 Simmondsia chinensis HOM05D000896 ORTHO05D000594 1.7e-09 67.4 153 28.1
BcaB06g28569 Brassica carinata HOM05D000896 ORTHO05D000594 2.2e-09 67.0 128 33.6
Cfa004779 Carpinus fangiana HOM05D000896 ORTHO05D000594 2.2e-09 67.0 128 32.0
Glyma.11G055000 Glycine max HOM05D000896 ORTHO05D000594 2.2e-09 67.0 139 30.2
PGR044G1241 Punica granatum HOM05D000896 ORTHO05D000594 2.2e-09 67.0 133 34.6
FvH4_5g16210 Fragaria vesca HOM05D000896 ORTHO05D000594 3.8e-09 66.2 123 35.8
FAN18G2330 Fragaria x ananassa HOM05D000896 ORTHO05D013425 3.8e-09 66.2 123 35.8
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 3.8e-09 66.2 142 31.0
Phvul.006G044200 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 3.8e-09 66.2 133 29.3
Phvul.006G044300 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 3.8e-09 66.2 119 30.3
PGSC0003DMG400006296 Solanum tuberosum HOM05D000011 ORTHO05D007164 3.8e-09 66.2 110 34.5
Actinidia23083 Actinidia chinensis HOM05D000896 ORTHO05D000594 4.9e-09 65.9 134 32.8
Sc09g0004950 Simmondsia chinensis HOM05D000896 ORTHO05D000594 4.9e-09 65.9 177 27.7
CiPaw.04G096300 Carya illinoinensis HOM05D000896 ORTHO05D000594 6.4e-09 65.5 120 37.5
Gohir.D07G208050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.4e-09 65.5 118 33.1
HanXRQChr03g0076911 Helianthus annuus HOM05D000896 ORTHO05D000594 6.4e-09 65.5 124 35.5
MD01G1052000 Malus domestica HOM05D000896 ORTHO05D000594 6.4e-09 65.5 125 32.0
QL11p026956 Quercus lobata HOM05D000896 ORTHO05D000594 6.4e-09 65.5 171 29.2
Actinidia23084 Actinidia chinensis HOM05D000896 ORTHO05D000594 8.4e-09 65.1 134 32.8
ClCG08G015060 Citrullus lanatus HOM05D000896 ORTHO05D000594 8.4e-09 65.1 134 29.9
Cfa004783 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.1e-08 64.7 163 29.4
PGR044G1601 Punica granatum HOM05D000896 ORTHO05D000594 1.1e-08 64.7 120 35.0
Thecc.10G126800 Theobroma cacao HOM05D000896 ORTHO05D000594 1.1e-08 64.7 127 29.9
Atru.chr3.2654 Acer truncatum HOM05D000896 ORTHO05D000594 1.4e-08 64.3 121 33.9
Atru.chr3.2660 Acer truncatum HOM05D000896 ORTHO05D000594 1.4e-08 64.3 121 33.9
Eucgr.I00811 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.4e-08 64.3 117 35.9
Eucgr.I00861 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.4e-08 64.3 116 33.6
Glyma.01G113600 Glycine max HOM05D000896 ORTHO05D000594 1.4e-08 64.3 103 33.0
Nitab4.5_0000264g0110 Nicotiana tabacum HOM05D000896 ORTHO05D000594 1.9e-08 63.9 131 35.9
Glyma.01G187100 Glycine max HOM05D000896 ORTHO05D000594 2.4e-08 63.5 166 27.7
Lalb_Chr09g0329091 Lupinus albus HOM05D000896 ORTHO05D000594 2.4e-08 63.5 115 31.3
Glyma.02G291400 Glycine max HOM05D000896 ORTHO05D000594 3.2e-08 63.2 160 30.6
Lsat_1_v5_gn_4_20600 Lactuca sativa HOM05D000896 ORTHO05D000594 3.2e-08 63.2 156 30.8
Prupe.2G159700 Prunus persica HOM05D000896 ORTHO05D000594 3.2e-08 63.2 170 27.1
MD07G1290000 Malus domestica HOM05D000896 ORTHO05D000594 4.2e-08 62.8 196 28.6
Medtr7g098870 Medicago truncatula HOM05D000896 ORTHO05D000594 4.2e-08 62.8 138 29.0
PGR119G0007 Punica granatum HOM05D000896 ORTHO05D000594 5.4e-08 62.4 128 32.8
PGSC0003DMG400043436 Solanum tuberosum HOM05D000896 ORTHO05D000594 5.4e-08 62.4 109 32.1
arahy.Tifrunner.gnm1.ann1.TNG32Q Arachis hypogaea HOM05D011529 ORTHO05D000594 7.1e-08 62.0 122 32.0
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 7.1e-08 62.0 126 31.7
Glyma.03G105900 Glycine max HOM05D000896 ORTHO05D000594 7.1e-08 62.0 159 27.0
Lsat_1_v5_gn_4_20940 Lactuca sativa HOM05D000896 ORTHO05D000594 7.1e-08 62.0 148 29.7
arahy.Tifrunner.gnm1.ann1.4P3ANK Arachis hypogaea HOM05D011529 ORTHO05D000594 9.3e-08 61.6 122 32.8
CAN.G476.8 Capsicum annuum HOM05D000896 ORTHO05D000594 9.3e-08 61.6 114 33.3
Cfa004785 Carpinus fangiana HOM05D000896 ORTHO05D000594 9.3e-08 61.6 149 29.5
Nitab4.5_0001582g0060 Nicotiana tabacum HOM05D000896 ORTHO05D000594 9.3e-08 61.6 108 34.3
Eucgr.I00818 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.2e-07 61.2 117 34.2
Glyma.01G187000 Glycine max HOM05D000896 ORTHO05D000594 1.2e-07 61.2 119 26.9
Lsat_1_v5_gn_4_20620 Lactuca sativa HOM05D000896 ORTHO05D000594 1.2e-07 61.2 160 29.4
PGSC0003DMG400035412 Solanum tuberosum HOM05D000896 ORTHO05D000594 1.2e-07 61.2 109 32.1
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 1.6e-07 60.8 119 31.1
Hma1.2p1_0128F.1_g059930 Hydrangea macrophylla HOM05D000896 ORTHO05D000594 1.6e-07 60.8 131 32.8
ClCG11G011860 Citrullus lanatus HOM05D000896 ORTHO05D000594 2.1e-07 60.5 141 29.1
Sopen11g001210 Solanum pennellii HOM05D000896 ORTHO05D000594 2.1e-07 60.5 131 32.1
Lsat_1_v5_gn_4_16540 Lactuca sativa HOM05D000896 ORTHO05D000594 2.7e-07 60.1 118 33.9
arahy.Tifrunner.gnm1.ann1.K5WR0Q Arachis hypogaea HOM05D011529 ORTHO05D000594 3.5e-07 59.7 122 31.1
Lsat_1_v5_gn_4_20980 Lactuca sativa HOM05D000896 ORTHO05D000594 3.5e-07 59.7 154 30.5
PGR119G0044 Punica granatum HOM05D000896 ORTHO05D000594 3.5e-07 59.7 135 30.4
Prupe.2G154200 Prunus persica HOM05D000896 ORTHO05D000594 4.6e-07 59.3 140 30.7
Sc09g0004860 Simmondsia chinensis HOM05D000896 ORTHO05D000594 4.6e-07 59.3 153 26.8
Eucgr.I00855 Eucalyptus grandis HOM05D000896 ORTHO05D000594 6.0e-07 58.9 115 33.0
AL4G15340 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.9e-07 58.5 150 28.0
BcaB06g28445 Brassica carinata HOM05D000896 ORTHO05D000594 7.9e-07 58.5 138 27.5
Carub.0001s0495 Capsella rubella HOM05D000896 ORTHO05D000594 7.9e-07 58.5 113 31.9
CiPaw.04G096400 Carya illinoinensis HOM05D000896 ORTHO05D000594 7.9e-07 58.5 202 29.7
Medtr5g092880 Medicago truncatula HOM05D000896 ORTHO05D000594 7.9e-07 58.5 118 32.2
Eucgr.B00726 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.0e-06 58.2 137 29.9
QL03p040404 Quercus lobata HOM05D000896 ORTHO05D000594 1.0e-06 58.2 190 31.6
QL03p040822 Quercus lobata HOM05D000896 ORTHO05D000594 1.0e-06 58.2 190 31.6
Migut.M01853 Erythranthe guttata HOM05D000896 ORTHO05D000594 1.3e-06 57.8 137 30.7
FAN03G1203 Fragaria x ananassa HOM05D016935 ORTHO05D000594 1.3e-06 57.8 112 33.0
Sc22g0001910 Simmondsia chinensis HOM05D000896 ORTHO05D000594 1.3e-06 57.8 161 26.7
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-06 57.4 125 30.4
BcaB06g28558 Brassica carinata HOM05D000896 ORTHO05D000594 1.7e-06 57.4 139 26.6
BcaB06g28447 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-06 57.0 138 27.5
C04p59750 Brassica napus HOM05D000896 ORTHO05D000594 2.3e-06 57.0 184 28.8
Cfa005655 Carpinus fangiana HOM05D000896 ORTHO05D000594 2.3e-06 57.0 112 32.1
Migut.M01844 Erythranthe guttata HOM05D000896 ORTHO05D000594 2.3e-06 57.0 137 30.7
Lsat_1_v5_gn_4_16560 Lactuca sativa HOM05D000896 ORTHO05D000594 2.3e-06 57.0 117 32.5
Cfa002712 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.0e-06 56.6 151 28.5
Cfa016248 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.0e-06 56.6 117 32.5
FvH4_7g13550 Fragaria vesca HOM05D000896 ORTHO05D000594 3.0e-06 56.6 123 28.5
FAN01G0395 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.0e-06 56.6 123 28.5
FAN06G0427 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.0e-06 56.6 123 28.5
FAN06G5122 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.0e-06 56.6 123 28.5
Nn1g05626 Nelumbo nucifera HOM05D000896 ORTHO05D000594 3.0e-06 56.6 156 30.8
CiPaw.14G107900 Carya illinoinensis HOM05D000896 ORTHO05D000594 3.9e-06 56.2 110 30.0
Ca_22963_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 3.9e-06 56.2 145 29.0
Ca_22965_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 3.9e-06 56.2 145 29.0
Duzib138G1324 Durio zibethinus HOM05D000896 ORTHO05D000594 3.9e-06 56.2 126 30.2
Medtr3g452640 Medicago truncatula HOM05D000896 ORTHO05D000594 3.9e-06 56.2 151 25.8
Phvul.010G000400 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 3.9e-06 56.2 117 29.1
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-06 55.8 175 25.7
C04p60850 Brassica napus HOM05D000896 ORTHO05D000594 5.1e-06 55.8 128 30.5
Cfa002709 Carpinus fangiana HOM05D000896 ORTHO05D000594 5.1e-06 55.8 151 28.5
FAN14G0662 Fragaria x ananassa HOM05D000896 ORTHO05D000594 5.1e-06 55.8 125 29.6
FAN14G1805 Fragaria x ananassa HOM05D000896 ORTHO05D000594 5.1e-06 55.8 125 29.6
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 5.1e-06 55.8 210 26.2
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 5.1e-06 55.8 210 26.2
HanXRQChr08g0217011 Helianthus annuus HOM05D000896 ORTHO05D000594 5.1e-06 55.8 123 30.1
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 5.1e-06 55.8 149 30.9
QL11p027543 Quercus lobata HOM05D000896 ORTHO05D000594 5.1e-06 55.8 136 30.9
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.6e-06 55.5 115 29.6
Duzib114G0938 Durio zibethinus HOM05D000896 ORTHO05D000594 6.6e-06 55.5 114 30.7
Duzib114G1002 Durio zibethinus HOM05D000896 ORTHO05D000594 6.6e-06 55.5 166 27.1
FvH4_7g31730 Fragaria vesca HOM05D016935 ORTHO05D000594 6.6e-06 55.5 165 30.9
FAN06G3056 Fragaria x ananassa HOM05D016935 ORTHO05D000594 6.6e-06 55.5 165 30.9
Lsat_1_v5_gn_4_21060 Lactuca sativa HOM05D000896 ORTHO05D000594 6.6e-06 55.5 153 28.1
PGR044G0072 Punica granatum HOM05D000896 ORTHO05D000594 6.6e-06 55.5 131 29.8
BcaB06g28529 Brassica carinata HOM05D000896 ORTHO05D000594 8.7e-06 55.1 135 28.9
BcaNung01491 Brassica carinata HOM05D000896 ORTHO05D000594 8.7e-06 55.1 117 30.8
BolC4t27576H Brassica oleracea HOM05D000896 ORTHO05D000594 8.7e-06 55.1 128 30.5
ECA233G1548 Erigeron canadensis HOM05D000896 ORTHO05D000594 8.7e-06 55.1 113 34.5
ECA234G1615 Erigeron canadensis HOM05D000896 ORTHO05D000594 8.7e-06 55.1 120 30.0
Thhalv10009508m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 8.7e-06 55.1 133 27.8
Gohir.D12G043450 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.7e-06 55.1 201 25.9
QL03p026378 Quercus lobata HOM05D000896 ORTHO05D000594 8.7e-06 55.1 143 32.2


User provided reference genes

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