Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.3e-234 813.9 395 100.0
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-202 709.9 400 85.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.6e-201 706.1 400 85.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.7e-193 678.7 397 82.6
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.3e-176 622.5 381 78.7
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.6e-174 615.1 382 77.5
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 4.7e-174 614.8 375 78.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.8e-173 610.9 379 77.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 6.8e-173 610.9 379 77.6
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.6e-172 607.4 359 80.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-170 603.2 365 78.4
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 7.1e-170 600.9 392 73.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.0e-169 597.8 342 81.6
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.0e-168 597.0 359 78.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.3e-168 596.7 398 73.1
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.7e-168 596.3 392 73.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.7e-168 596.3 362 77.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.5e-167 592.4 392 73.2
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 5.6e-167 591.3 394 73.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-166 589.7 392 73.0
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 6.2e-166 587.8 357 79.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.1e-165 585.5 389 73.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 4.0e-165 585.1 379 74.9
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.2e-165 584.7 388 72.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 6.9e-165 584.3 392 72.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.2e-164 583.6 398 72.4
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.2e-164 583.6 391 71.1
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.2e-164 583.6 372 75.8
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.2e-164 583.6 383 73.9
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.5e-164 583.2 366 76.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-164 583.2 366 76.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 3.4e-164 582.0 388 72.4
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-163 579.3 345 78.8
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 2.2e-163 579.3 388 71.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.9e-163 578.9 362 76.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 4.9e-163 578.2 387 73.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 6.4e-163 577.8 342 79.8
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.4e-163 577.4 349 77.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 8.4e-163 577.4 361 76.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 8.4e-163 577.4 370 75.1
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.4e-162 575.9 379 72.8
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 5.4e-162 574.7 387 71.8
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 9.3e-162 573.9 377 72.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 9.3e-162 573.9 376 73.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-161 573.2 344 77.3
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.6e-161 573.2 392 71.2
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.1e-161 572.8 373 73.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.0e-160 570.5 380 72.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.3e-160 569.3 388 71.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.3e-160 569.3 360 76.7
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.0e-160 568.9 362 74.9
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 5.1e-160 568.2 341 77.4
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 6.6e-160 567.8 389 71.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 6.6e-160 567.8 387 72.1
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 6.6e-160 567.8 360 74.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-159 567.0 388 71.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.5e-159 566.6 378 73.5
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.6e-159 564.7 340 77.1
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 7.3e-159 564.3 378 72.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 7.3e-159 564.3 378 72.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.3e-158 563.5 378 72.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.1e-158 562.8 378 72.0
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.8e-158 561.6 381 70.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.8e-158 561.6 381 70.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.2e-156 557.0 370 72.7
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.0e-156 556.2 342 75.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.4e-156 555.4 340 78.2
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.3e-155 553.5 343 75.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.9e-155 552.4 376 69.7
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.8e-155 552.0 386 70.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.9e-155 551.6 377 71.1
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.4e-155 551.2 363 72.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 8.4e-155 550.8 358 73.7
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.4e-154 549.3 350 74.6
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.2e-154 548.9 357 73.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.1e-153 546.2 382 68.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.0e-153 544.7 357 72.5
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.0e-153 544.7 342 76.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.9e-153 544.3 400 65.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.3e-152 543.5 381 69.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-152 543.5 382 68.3
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.3e-152 542.7 380 68.9
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.9e-152 542.0 397 67.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 8.7e-152 540.8 327 75.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.1e-151 540.4 389 66.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.5e-151 539.3 346 74.9
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.5e-151 539.3 344 75.3
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.6e-151 538.1 361 70.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 7.4e-151 537.7 381 68.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.4e-151 537.7 325 76.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 9.6e-151 537.3 381 68.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.8e-150 535.8 359 69.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.8e-150 535.8 375 67.7
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 8.1e-150 534.3 359 69.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-149 533.9 359 71.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.4e-149 532.7 342 72.2
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 4.5e-148 528.5 379 69.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 9.9e-148 527.3 367 67.3
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.3e-147 526.9 372 68.0
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.3e-147 526.9 336 74.4
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.4e-147 524.6 373 67.3
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 8.4e-147 524.2 355 70.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 3.2e-146 522.3 393 66.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 5.5e-146 521.5 369 67.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.6e-145 518.5 344 71.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.9e-145 517.7 381 66.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.9e-143 513.1 361 67.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.6e-143 510.8 309 77.0
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 4.0e-141 505.4 349 70.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.0e-141 505.4 340 69.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 4.5e-140 501.9 338 71.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 7.6e-140 501.1 306 75.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.3e-138 494.2 393 65.9
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 7.4e-135 484.6 352 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.1e-133 479.2 380 61.1
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.2e-130 469.2 398 60.1
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 6.7e-128 461.5 367 62.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 8.8e-128 461.1 388 60.8
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.5e-127 460.3 369 61.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.4e-125 453.0 317 67.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.1e-125 452.2 350 62.3
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.2e-124 450.7 346 61.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-124 449.1 285 75.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 3.8e-123 445.7 341 62.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 5.1e-120 435.3 367 60.5
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.1e-117 425.6 231 82.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 6.5e-115 418.3 328 58.5
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.7e-113 412.1 385 56.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.7e-112 408.3 301 65.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 2.0e-108 396.7 316 62.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.5e-108 396.0 373 52.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 4.1e-101 372.5 206 84.0
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.7e-100 368.2 198 84.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 4.1e-93 345.9 198 78.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.2e-89 334.3 219 73.1
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.7e-89 332.4 231 71.0
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-88 330.5 177 85.9
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.6e-87 326.6 287 57.1
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 5.4e-85 318.9 231 67.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.9e-78 295.8 229 64.6
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 9.2e-77 291.6 399 39.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 4.3e-74 282.7 304 45.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.0e-72 276.2 342 41.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.2e-70 270.4 221 61.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.9e-70 269.2 252 54.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.2e-60 238.0 373 37.8
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.9e-58 230.7 193 58.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.4e-53 213.8 361 36.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.9e-48 195.7 125 76.8
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-35 153.7 148 56.1
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.6e-34 149.4 117 63.2
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.1e-33 147.5 121 57.9
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.2e-25 119.0 66 81.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.0e-19 102.1 56 80.4


User provided reference genes

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