Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 0.0e+00 1353.6 742 100.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.4e-267 926.4 762 72.2
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 9.9e-266 920.2 763 71.3
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.4e-264 915.6 764 72.4
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 5.5e-131 472.6 819 48.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 6.2e-127 459.1 814 46.9
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.2e-124 450.7 819 46.6
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.0e-121 441.8 798 45.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.2e-116 424.1 780 44.9
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.7e-114 417.2 794 44.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.7e-113 412.5 756 44.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.2e-109 401.7 793 44.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-109 400.6 678 47.5
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.6e-109 400.6 768 44.9
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 4.5e-109 399.8 774 45.0
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-108 398.7 772 42.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.3e-108 398.3 791 44.2
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.5e-108 395.6 774 44.8
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.5e-108 395.6 774 44.8
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.4e-107 392.1 771 44.5
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.7e-106 390.6 798 43.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.4e-105 388.3 784 44.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-104 384.0 799 43.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.7e-103 380.2 806 43.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-102 377.5 774 43.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.5e-101 373.6 769 42.0
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.7e-100 371.3 712 45.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.5e-99 368.2 784 43.0
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.7e-98 364.0 750 43.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 8.0e-98 362.5 805 42.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.0e-97 360.5 799 43.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.8e-97 359.0 793 43.0
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.0e-96 357.8 714 43.8
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.3e-95 355.1 714 43.7
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.7e-95 353.6 810 42.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.4e-94 351.7 796 42.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.8e-94 351.3 774 42.1
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.4e-94 350.9 794 41.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-94 350.5 736 43.3
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 4.1e-94 350.1 764 42.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.0e-94 349.4 692 43.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.5e-93 347.1 712 44.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.5e-91 340.9 818 40.7
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 3.6e-90 337.0 779 40.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 6.1e-90 336.3 788 40.5
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 6.1e-90 336.3 791 40.7
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.8e-89 334.7 777 41.8
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-88 332.0 693 43.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 5.4e-86 323.2 782 40.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.8e-84 317.0 772 39.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 8.5e-84 315.8 717 41.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.6e-82 310.5 708 41.4
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.0e-81 308.9 818 39.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 8.8e-81 305.8 701 41.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.4e-80 303.9 785 39.4
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-78 298.9 634 41.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.5e-77 293.5 691 41.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.0e-76 292.4 732 39.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 6.6e-76 289.7 697 39.9
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 4.2e-75 287.0 766 39.2
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 9.5e-75 285.8 758 40.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.5e-75 285.8 701 39.8
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.8e-74 284.3 656 40.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.8e-74 284.3 752 38.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 8.0e-74 282.7 599 43.7
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 9.8e-72 275.8 785 37.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.3e-71 275.4 700 41.7
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.3e-71 275.4 761 37.7
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 8.3e-71 272.7 737 39.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-70 272.3 617 40.4
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.4e-70 271.9 702 38.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.2e-70 270.8 749 39.7
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.0e-69 268.1 751 36.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.0e-69 268.1 701 40.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-68 265.8 645 39.7
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.7e-68 265.0 714 38.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 3.9e-68 263.8 688 39.4
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.5e-67 261.9 782 37.3
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 7.3e-67 259.6 686 38.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.1e-66 256.5 771 37.4
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 6.1e-66 256.5 726 35.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-65 254.6 596 39.9
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 6.8e-65 253.1 729 36.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.7e-63 247.3 741 36.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.9e-62 245.0 732 38.5
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 7.3e-59 233.0 623 38.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.1e-58 229.6 728 35.6
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.4e-57 228.8 494 42.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 5.2e-57 226.9 713 36.7
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.2e-56 225.7 688 35.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.3e-55 222.2 755 35.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.3e-55 222.2 763 34.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-55 221.5 722 34.3
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-54 219.2 702 35.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.6e-53 215.3 797 33.2
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.5e-53 214.2 673 34.6
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.6e-53 213.8 691 36.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.0e-52 212.6 686 35.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.1e-52 210.3 674 34.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.5e-51 208.8 698 36.1
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.6e-51 206.8 770 36.1
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 7.3e-51 206.5 758 35.9
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 6.2e-50 203.4 656 37.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.8e-49 201.8 594 36.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.3e-49 201.4 712 36.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.1e-49 201.1 255 52.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.0e-49 200.7 654 37.0
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 6.8e-49 199.9 334 47.6
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 8.9e-49 199.5 700 33.1
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.2e-48 199.1 646 34.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.4e-48 197.6 752 33.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-47 195.3 740 37.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.7e-47 195.3 697 34.0
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 8.4e-47 193.0 660 34.7
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-46 192.2 712 34.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.2e-46 191.0 616 35.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.1e-46 189.9 657 34.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 6.0e-45 186.8 722 33.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.0e-44 184.5 664 35.7
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 5.1e-44 183.7 583 35.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.3e-43 180.6 618 33.8
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 9.6e-43 179.5 689 35.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-42 179.1 692 36.4
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.1e-42 178.3 726 32.6
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-41 175.6 713 34.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 5.2e-41 173.7 686 34.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 5.2e-41 173.7 700 32.4
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.6e-40 169.9 704 31.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-37 162.5 651 32.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.2e-37 162.5 684 31.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.7e-37 161.4 459 37.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.8e-37 159.8 758 31.9
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.9e-36 157.5 688 31.5
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.6e-36 156.8 416 36.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-33 149.4 232 41.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.8e-33 148.7 464 37.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.1e-33 147.9 314 43.3
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.4e-32 144.4 411 41.4
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 3.4e-32 144.4 651 32.3
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.4e-32 144.1 271 40.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.5e-29 134.4 376 38.6
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 7.3e-27 126.7 523 32.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 9.6e-27 126.3 534 33.5
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-26 125.2 598 32.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-25 122.1 417 37.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-24 118.6 141 52.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.6e-24 116.7 158 48.7
MELO3C023611.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.6e-24 116.7 122 60.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.7e-23 115.5 144 57.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.2e-22 111.3 711 28.6
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.3e-22 109.8 810 26.0
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.6e-21 109.0 656 28.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.6e-21 109.0 656 28.0
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.1e-21 108.6 144 47.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 8.7e-20 103.2 516 31.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 4.3e-19 100.9 496 31.0
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.3e-17 94.0 578 29.4
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 7.6e-16 90.1 125 46.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.6e-16 90.1 235 34.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.8e-15 87.8 523 30.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.1e-11 76.3 204 38.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 6.3e-10 70.5 295 30.5
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.4e-09 68.6 90 44.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-08 65.5 176 37.5
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.0e-08 65.5 136 39.7
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 5.9e-08 63.9 115 47.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-07 62.8 235 29.4
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.7e-07 62.4 280 29.3
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.9e-07 61.6 184 35.9
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.5e-07 60.5 65 55.4
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 1.4e-06 59.3 113 38.1
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 2.5e-06 58.5 86 50.0


User provided reference genes

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