Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 4.8e-263 910.6 453 100.0
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.8e-241 839.0 453 90.7
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 6.5e-220 767.3 412 91.5
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.7e-215 751.5 443 81.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 6.6e-212 740.7 445 83.6
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 8.0e-210 733.8 452 78.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.0e-209 733.4 453 77.3
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.4e-209 733.0 452 78.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.8e-209 732.6 453 77.9
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.0e-209 731.5 453 77.7
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 5.2e-209 731.1 443 79.7
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 6.8e-209 730.7 453 77.3
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.7e-207 726.1 449 78.0
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 4.1e-206 721.5 460 77.2
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 5.4e-206 721.1 450 76.0
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 7.0e-206 720.7 445 78.9
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 9.2e-206 720.3 450 76.9
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 9.2e-206 720.3 452 77.0
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.2e-205 719.9 448 78.3
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.6e-205 719.5 451 78.0
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.7e-205 718.8 453 77.3
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.7e-205 718.8 476 74.6
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 3.5e-205 718.4 445 78.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.6e-205 718.0 443 78.8
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.0e-204 716.8 442 78.5
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 8.6e-204 713.8 446 76.7
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.5e-203 713.0 453 75.5
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 4.3e-203 711.4 453 76.6
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 5.6e-203 711.1 458 74.5
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.2e-202 709.9 452 77.7
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.1e-202 709.1 453 76.4
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.8e-202 708.8 433 77.1
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.8e-202 708.8 430 77.7
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 4.7e-202 708.0 433 76.9
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.4e-201 706.4 455 76.3
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 4.0e-201 704.9 438 76.0
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 4.0e-201 704.9 450 77.3
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 6.8e-201 704.1 433 76.9
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 9.8e-200 700.3 458 73.1
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.3e-199 699.9 452 74.8
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 1.3e-199 699.9 452 75.9
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.3e-199 699.9 454 75.6
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.2e-199 699.1 454 75.3
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 4.9e-199 698.0 456 73.7
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.4e-198 696.4 455 74.3
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.4e-198 696.4 457 73.5
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 2.4e-198 695.7 457 72.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 3.2e-198 695.3 430 78.6
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 5.4e-198 694.5 444 74.3
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.6e-197 693.0 459 72.5
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 7.8e-197 690.6 417 79.1
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.7e-196 689.5 450 74.4
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 3.0e-196 688.7 453 73.7
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 3.0e-196 688.7 451 72.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 5.0e-196 688.0 476 72.9
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 6.6e-196 687.6 443 75.8
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 3.3e-195 685.3 481 70.5
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 9.5e-195 683.7 453 72.4
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 9.5e-195 683.7 442 74.4
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.6e-194 682.9 443 74.5
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.8e-194 682.2 457 72.2
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 6.2e-194 681.0 444 72.5
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 3.1e-193 678.7 469 70.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.2e-192 676.8 451 72.3
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 4.4e-192 674.9 463 70.2
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 7.5e-192 674.1 442 72.9
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 7.5e-192 674.1 451 71.4
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.9e-191 672.2 445 72.1
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 8.3e-191 670.6 444 71.4
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.9e-190 669.5 444 71.2
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 4.1e-190 668.3 444 71.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 4.1e-190 668.3 455 70.5
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 5.4e-190 667.9 444 71.6
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.6e-189 666.4 455 70.8
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.7e-189 665.6 444 73.9
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.5e-189 665.2 456 70.6
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.0e-189 664.5 443 72.2
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.3e-188 663.3 456 70.8
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 2.3e-188 662.5 444 70.9
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.1e-187 660.2 448 70.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.1e-187 660.2 450 70.2
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 3.3e-187 658.7 446 72.6
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 4.3e-187 658.3 444 70.9
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 9.5e-187 657.1 464 68.1
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 9.5e-187 657.1 453 70.2
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 2.8e-186 655.6 473 67.0
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.1e-185 653.7 444 70.0
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.5e-184 649.8 497 67.2
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 9.9e-184 647.1 453 71.7
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 9.9e-184 647.1 477 69.2
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 7.1e-182 641.0 456 70.6
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 8.7e-180 634.0 459 69.5
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.9e-179 632.9 406 76.6
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 6.9e-177 624.4 407 74.9
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 9.0e-177 624.0 430 68.6
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 3.8e-175 618.6 484 62.4
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 4.6e-173 611.7 412 70.9
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 4.0e-169 598.6 388 72.7
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 9.0e-169 597.4 360 78.6
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.6e-165 586.6 448 63.8
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 6.7e-164 581.3 446 65.5
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.5e-163 580.1 465 64.3
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 9.9e-160 567.4 450 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 7.4e-155 551.2 447 60.0
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 3.7e-154 548.9 428 60.7
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 4.9e-151 538.5 430 59.1
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 3.5e-149 532.3 430 60.9
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.1e-147 527.3 318 78.6
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.7e-141 506.1 436 56.9
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 3.0e-132 476.1 454 57.0
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 8.8e-132 474.6 278 80.2
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.0e-115 420.2 445 53.9
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 7.2e-110 401.7 432 44.4
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.2e-102 375.9 426 46.9
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.2e-99 367.9 315 60.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.1e-97 361.3 367 54.5
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 2.3e-87 327.0 484 38.6
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.2e-85 321.2 180 83.3
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.6e-56 224.6 184 62.5
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 7.8e-56 222.2 336 39.9
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 5.6e-54 216.1 108 88.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 2.6e-51 207.2 372 38.2
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.6e-43 180.6 125 76.0
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-40 171.8 123 71.5
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 2.7e-40 170.6 403 32.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 1.4e-36 158.3 137 59.9
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 4.3e-30 136.7 101 66.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 4.8e-29 133.3 85 67.1
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 1.7e-26 124.8 126 50.0
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 4.3e-22 110.2 83 63.9
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 5.7e-22 109.8 63 73.0
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.3e-21 108.6 192 33.9
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.0e-18 99.0 76 61.8
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.3e-18 98.6 101 55.4
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-18 98.6 120 48.3
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.9e-17 94.7 66 66.7
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 2.8e-13 80.9 70 60.0
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 4.1e-12 77.0 56 67.9


User provided reference genes

Program Settings