Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 3.4e-225 784.6 387 100.0
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 7.8e-89 331.6 469 44.3
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.3e-83 314.3 462 44.2
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 2.9e-83 313.2 458 43.4
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-80 304.3 459 44.7
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.1e-80 302.4 455 43.1
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.5e-79 300.8 455 42.9
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.5e-79 300.8 455 42.9
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 5.6e-79 298.9 466 42.3
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.1e-71 274.6 463 41.9
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.9e-71 273.9 478 38.9
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.3e-71 272.7 457 39.2
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.6e-70 270.8 442 40.7
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 1.8e-69 267.3 460 40.4
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.4e-69 266.9 488 39.1
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.5e-68 262.7 454 38.3
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 5.8e-68 262.3 440 40.9
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.0e-67 261.5 454 39.6
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.2e-67 260.4 460 40.0
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.2e-67 260.4 454 39.4
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 8.4e-67 258.5 467 39.6
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.1e-66 258.1 452 39.6
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.5e-66 256.9 461 40.3
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 5.5e-66 255.8 465 36.8
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 7.1e-66 255.4 465 37.4
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 9.3e-66 255.0 449 41.2
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 9.3e-66 255.0 463 39.3
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.6e-65 254.2 447 38.9
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.0e-64 251.5 454 39.0
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-64 251.1 453 38.6
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 3.0e-64 250.0 441 36.7
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.7e-64 248.4 461 38.8
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 2.5e-63 246.9 465 36.3
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 2.2e-62 243.8 461 38.2
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 6.3e-62 242.3 443 37.5
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.4e-61 241.1 517 33.5
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-61 240.7 454 37.4
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 4.1e-61 239.6 453 38.0
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 4.5e-60 236.1 460 37.2
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.5e-60 236.1 455 37.1
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.0e-59 235.0 453 35.8
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.7e-59 234.2 472 36.4
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.1e-58 231.5 457 36.5
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.4e-58 231.1 465 36.8
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.9e-58 230.7 457 37.0
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 3.2e-58 229.9 431 39.0
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.2e-58 229.6 465 36.8
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.5e-58 229.2 459 36.4
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 1.2e-57 228.0 464 36.9
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.6e-57 227.6 454 36.1
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.7e-57 226.9 454 35.0
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 3.6e-57 226.5 448 38.6
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 6.1e-57 225.7 452 36.1
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 6.1e-57 225.7 440 36.6
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.8e-56 224.2 445 37.1
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 8.8e-56 221.9 455 36.0
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 1.1e-55 221.5 465 35.9
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.1e-55 221.5 453 35.3
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 1.7e-54 217.6 456 35.1
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.7e-54 217.6 454 34.8
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.7e-54 217.6 456 35.3
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.8e-54 216.9 425 36.7
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 4.8e-54 216.1 461 35.6
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 8.2e-54 215.3 429 37.3
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.1e-53 214.9 452 35.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.1e-53 214.9 452 35.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-53 214.5 455 36.7
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.3e-53 212.6 468 34.4
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 9.1e-53 211.8 448 37.1
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.5e-52 211.1 428 38.8
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.0e-52 210.7 459 32.5
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.7e-52 208.8 465 34.0
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.3e-51 208.0 444 34.2
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.3e-51 208.0 446 34.3
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.2e-51 207.2 412 36.2
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.0e-51 206.1 452 34.7
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 5.0e-51 206.1 461 33.8
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.5e-51 205.7 456 35.1
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 6.5e-51 205.7 461 33.8
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 8.5e-51 205.3 451 35.0
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.5e-51 205.3 452 35.0
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.4e-50 204.5 486 33.5
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 1.9e-50 204.1 399 36.3
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 2.5e-50 203.8 458 35.6
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 3.2e-50 203.4 465 33.5
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 5.5e-50 202.6 465 33.3
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.2e-49 201.4 445 35.5
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 1.6e-49 201.1 452 33.8
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 2.1e-49 200.7 421 34.9
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-49 199.9 447 35.3
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 4.7e-49 199.5 453 33.1
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 6.1e-49 199.1 462 32.3
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.0e-48 198.4 430 35.1
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.8e-48 197.6 463 32.2
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 5.1e-48 196.1 436 33.7
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 8.8e-48 195.3 458 34.3
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.0e-47 194.1 459 32.2
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 4.4e-47 193.0 408 38.0
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 9.7e-47 191.8 466 33.9
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-46 191.4 443 34.1
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 3.7e-46 189.9 455 34.1
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 6.3e-46 189.1 453 32.2
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 5.3e-45 186.0 456 32.2
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 5.3e-45 186.0 456 32.2
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 7.0e-45 185.7 394 34.8
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 2.0e-44 184.1 451 33.3
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.0e-44 184.1 448 32.8
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 2.6e-44 183.7 450 32.9
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 2.6e-44 183.7 454 31.7
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 3.5e-44 183.3 454 32.4
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 4.5e-44 183.0 456 30.5
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 4.5e-44 183.0 451 32.8
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 4.5e-44 183.0 454 32.4
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 5.9e-44 182.6 453 32.5
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 7.7e-44 182.2 479 29.9
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 7.7e-44 182.2 453 31.1
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 7.7e-44 182.2 460 33.9
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 7.7e-44 182.2 458 32.8
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.0e-43 181.8 462 31.2
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.7e-43 181.0 445 32.8
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.7e-43 181.0 466 31.5
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 2.2e-43 180.6 452 32.7
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 3.8e-43 179.9 451 32.8
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.8e-43 179.9 438 32.4
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.1e-42 178.3 454 31.9
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.5e-42 176.0 418 32.1
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-41 174.1 463 33.0
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-41 174.1 424 32.5
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 4.7e-41 172.9 464 31.0
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.7e-41 172.9 428 31.5
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.8e-40 171.0 448 31.0
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 1.8e-40 171.0 308 38.6
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.4e-39 166.4 465 31.6
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 5.7e-39 166.0 449 30.7
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.4e-39 165.6 483 28.8
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.1e-37 161.8 448 30.6
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 2.4e-37 160.6 462 30.1
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 3.1e-37 160.2 318 38.4
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.2e-36 158.3 315 38.7
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.6e-36 157.9 478 30.3
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-36 157.9 388 32.7
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.6e-36 157.1 453 29.6
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.5e-36 156.4 297 36.0
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.8e-35 153.3 290 35.5
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-34 151.4 311 36.7
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 3.2e-34 150.2 245 40.8
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 4.2e-34 149.8 303 35.6
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 4.7e-33 146.4 316 36.4
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 2.4e-29 134.0 241 36.1
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 4.1e-29 133.3 467 28.3
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.3e-29 132.9 388 29.6
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.1e-25 120.9 179 39.7
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 5.2e-24 116.3 349 29.8
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 3.4e-23 113.6 174 37.9
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 2.8e-22 110.5 397 28.5
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 5.4e-21 106.3 191 39.8
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 2.7e-20 104.0 151 42.4
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 4.5e-20 103.2 136 46.3
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.0e-19 102.1 201 35.3
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.8e-19 100.1 339 25.7
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.5e-18 97.4 223 31.4
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 4.2e-18 96.7 328 27.4
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.2e-18 96.7 223 31.8
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 9.5e-18 95.5 152 40.1
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 1.2e-17 95.1 137 44.5
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-17 94.7 417 26.9
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 1.4e-16 91.7 120 43.3
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 2.3e-16 90.9 164 40.2
Sabra15G0119700 Salix brachista HOM05D003325 ORTHO05D003852 2.3e-16 90.9 116 38.8
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 2.3e-16 90.9 213 34.3
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 5.2e-16 89.7 161 34.2
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 4.9e-14 83.2 134 41.0
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 8.3e-14 82.4 164 36.0
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 5.4e-13 79.7 156 35.3
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 1.7e-11 74.7 74 55.4
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-10 71.2 97 42.3
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 3.3e-10 70.5 125 36.0
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-09 68.6 69 55.1
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.6e-09 68.2 118 34.7
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.5e-07 61.6 74 45.9
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 2.9e-06 57.4 150 28.7
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 6.4e-06 56.2 77 40.3


User provided reference genes

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