Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 5.8e-288 993.8 612 100.0
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.3e-215 752.7 610 75.7
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 4.4e-195 685.3 607 72.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 1.7e-133 480.7 623 55.9
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 2.0e-131 473.8 557 59.2
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 4.7e-128 462.6 514 61.7
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 7.9e-128 461.8 616 55.0
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 3.9e-127 459.5 609 53.5
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 6.3e-125 452.2 533 63.2
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.1e-124 451.4 617 56.7
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.0e-122 444.9 542 60.3
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 6.5e-122 442.2 542 60.0
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.1e-121 441.4 615 48.3
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.2e-120 438.0 542 60.1
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.6e-120 437.6 556 58.3
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.3e-119 433.7 551 58.4
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.7e-117 427.6 600 52.3
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.2e-117 427.2 604 55.5
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 2.0e-115 420.6 476 65.5
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.5e-115 419.9 476 64.7
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.5e-115 419.5 476 64.9
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 2.9e-114 416.8 472 68.0
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 5.0e-114 416.0 476 67.4
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 8.5e-114 415.2 480 61.2
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 4.8e-109 399.4 457 63.5
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 3.1e-108 396.7 480 59.6
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 2.7e-107 393.7 489 60.5
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.7e-107 393.7 489 58.5
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.7e-106 391.0 501 57.9
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.9e-105 387.5 555 52.6
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.8e-103 380.9 491 61.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.0e-102 377.5 497 60.4
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.2e-101 374.0 481 57.4
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 6.3e-101 372.5 512 54.3
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.8e-100 370.9 481 52.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 2.0e-99 367.5 445 64.9
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 2.3e-98 364.0 513 53.2
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.5e-97 361.3 522 58.0
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.2e-96 358.2 443 59.6
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 2.1e-96 357.5 449 62.8
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 3.6e-96 356.7 502 59.2
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 6.1e-96 355.9 453 60.0
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.0e-95 355.1 450 58.7
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.4e-95 354.8 461 58.6
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 2.3e-95 354.0 449 58.4
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 4.0e-95 353.2 480 59.4
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 6.8e-95 352.4 442 60.2
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.9e-93 347.1 616 49.4
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.7e-93 346.7 444 63.3
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 4.9e-93 346.3 440 57.5
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 6.4e-93 345.9 505 52.5
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 8.3e-93 345.5 461 57.3
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.4e-92 344.7 471 55.8
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 7.0e-92 342.4 447 56.8
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.6e-91 341.3 467 60.0
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 3.5e-91 340.1 533 52.3
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 6.0e-91 339.3 450 60.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 7.8e-91 339.0 563 54.2
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 7.8e-91 339.0 449 55.7
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.0e-90 338.6 449 55.5
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.7e-90 337.8 543 57.8
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.3e-89 333.6 405 68.1
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 3.3e-89 333.6 456 62.1
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 6.2e-88 329.3 458 55.2
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 5.2e-87 326.2 449 55.5
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 8.9e-87 325.5 487 58.7
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 1.2e-86 325.1 487 58.1
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 2.0e-86 324.3 514 58.9
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 3.4e-86 323.6 381 63.5
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 7.5e-86 322.4 461 52.9
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 7.5e-86 322.4 485 52.2
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 1.3e-85 321.6 454 55.9
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 1.7e-85 321.2 444 57.9
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 2.9e-85 320.5 444 58.3
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 3.2e-84 317.0 543 53.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 5.4e-84 316.2 500 55.4
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.5e-83 313.5 450 61.1
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.0e-82 312.0 475 55.2
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.3e-82 310.8 467 59.5
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 8.6e-82 308.9 440 55.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.2e-80 305.1 425 59.8
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 1.4e-79 301.6 461 59.7
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 8.9e-79 298.9 451 58.3
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 9.9e-78 295.4 451 58.1
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 7.3e-73 279.3 449 49.2
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.2e-72 278.5 451 53.4
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.8e-72 277.3 523 50.5
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.4e-71 275.0 523 49.3
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 5.8e-70 269.6 417 56.1
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 3.3e-65 253.8 388 55.9
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 5.6e-65 253.1 400 38.2
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 5.6e-65 253.1 400 38.2
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.8e-64 250.8 460 55.4
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.4e-63 247.7 456 34.9
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 6.9e-55 219.5 442 49.3
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 6.9e-55 219.5 442 49.3
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 5.6e-49 199.9 390 50.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.4e-47 195.3 164 52.4
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.4e-47 195.3 164 52.4
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 1.4e-47 195.3 178 56.7
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.1e-41 175.6 193 48.7
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 2.4e-39 167.9 197 43.7
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 6.5e-37 159.8 209 47.4
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.4e-36 158.7 336 30.7
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-11 75.9 111 36.9
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.2e-11 75.9 111 36.9
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 3.0e-10 71.2 147 28.6
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 5.2e-10 70.5 145 33.1
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 5.7e-09 67.0 162 28.4
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.7e-08 65.5 146 28.1
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.7e-08 65.5 159 26.4
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.8e-08 64.7 159 24.5
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-07 62.0 131 27.5
Cpa.g.sc131.84 Carica papaya HOM05D000424 ORTHO05D000355 1.8e-07 62.0 150 25.3
THA.LOC104808230 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 1.8e-07 62.0 141 29.8
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.4e-07 61.6 145 25.5
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 2.4e-07 61.6 132 29.5
RhsimUnG0030800 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.1e-07 61.2 144 27.8
AagrBONN_evm.TU.Sc2ySwM_228.823 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-07 60.8 193 24.9
THA.LOC104812502 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 4.1e-07 60.8 145 27.6
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 5.3e-07 60.5 152 27.0
AagrBONN_evm.TU.Sc2ySwM_362.660 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 60.1 180 24.4
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 9.1e-07 59.7 156 27.6
Lj1C655T0 Lonicera japonica HOM05D000001 ORTHO05D000003 9.1e-07 59.7 139 28.1
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 9.1e-07 59.7 138 28.3
Lj6C58T5 Lonicera japonica HOM05D000001 ORTHO05D000003 1.2e-06 59.3 180 26.7
SEGI_16813 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.2e-06 59.3 145 22.1
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.6e-06 58.9 138 27.5
CDE10G0767 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 1.6e-06 58.9 140 25.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.6e-06 58.9 148 25.0
AagrBONN_evm.TU.Sc2ySwM_344.940 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 58.5 139 28.1
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 2.0e-06 58.5 132 28.8
MSTRG.8965 Avicennia marina HOM05D000891 ORTHO05D000761 2.6e-06 58.2 147 28.6
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 2.6e-06 58.2 149 27.5
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 2.6e-06 58.2 48 58.3
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 2.6e-06 58.2 155 27.7
Rhsim09G0006000 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.5e-06 57.8 144 27.1
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 3.5e-06 57.8 146 28.1
GSVIVG01035759001 Vitis vinifera HOM05D000001 ORTHO05D010146 3.5e-06 57.8 129 31.0
AagrBONN_evm.TU.Sc2ySwM_368.3189 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 57.4 119 29.4
SMO340G0043 Selaginella moellendorffii HOM05D031821 ORTHO05D036827 4.5e-06 57.4 141 29.1
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 4.5e-06 57.4 197 25.4
ECA236G2823 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.9e-06 57.0 152 23.7
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 5.9e-06 57.0 149 27.5
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 5.9e-06 57.0 157 28.7
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 7.7e-06 56.6 155 25.8
AagrBONN_evm.TU.Sc2ySwM_228.880 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 56.6 151 26.5


User provided reference genes

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