Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 0.0e+00 1366.7 727 100.0
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 0.0e+00 1244.2 734 91.0
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 0.0e+00 1211.4 735 88.8
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 0.0e+00 1204.9 735 89.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.3e-299 1031.9 730 76.8
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 7.4e-298 1026.9 749 74.5
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 9.6e-298 1026.5 736 76.6
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 4.8e-297 1024.2 750 74.8
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.0e-295 1018.8 717 77.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 4.2e-293 1011.1 729 74.8
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.3e-293 1010.0 749 74.8
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.7e-292 1008.4 749 74.2
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 7.9e-292 1006.9 736 75.5
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 8.7e-291 1003.4 728 75.8
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.5e-290 1002.7 730 74.7
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 4.3e-290 1001.1 754 72.8
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.1e-288 996.5 750 73.1
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.4e-288 995.3 748 73.1
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.0e-287 992.3 749 73.4
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.4e-287 991.5 744 73.1
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.3e-286 989.6 748 72.7
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.3e-286 989.6 748 72.7
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 2.9e-286 988.4 748 72.7
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.2e-285 984.9 744 73.0
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 9.3e-285 983.4 759 72.5
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.2e-284 983.0 735 73.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.1e-284 982.2 749 72.2
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.7e-284 981.9 735 73.5
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 3.5e-284 981.5 718 75.2
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.3e-283 979.5 735 73.3
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.3e-283 979.5 730 73.6
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.8e-283 979.2 744 72.6
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-283 979.2 730 73.3
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.0e-283 978.4 748 71.8
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.0e-283 978.4 733 73.1
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 5.1e-283 977.6 749 71.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 5.1e-283 977.6 740 73.2
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.5e-282 976.1 740 73.1
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-282 975.3 748 71.8
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.3e-282 974.5 744 72.6
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.4e-282 973.8 730 72.9
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.3e-281 973.0 737 72.7
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 6.3e-281 970.7 721 73.2
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 6.3e-281 970.7 747 71.2
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.3e-281 970.7 730 72.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 5.9e-279 964.1 737 72.6
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.7e-278 962.6 735 72.4
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.8e-278 961.4 750 71.2
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.8e-275 952.6 750 69.6
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 5.1e-275 951.0 749 70.8
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 1.5e-274 949.5 748 70.7
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 2.5e-274 948.7 747 70.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 4.3e-274 948.0 752 70.7
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.3e-273 946.4 750 69.9
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.7e-273 944.9 741 70.7
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.6e-271 938.7 748 70.1
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 2.9e-270 935.3 733 72.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.9e-270 935.3 742 70.5
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 1.1e-269 933.3 747 69.6
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.1e-269 933.3 747 69.7
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.1e-269 933.3 753 69.7
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 4.2e-269 931.4 741 69.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 5.5e-269 931.0 747 69.6
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 9.4e-269 930.2 747 69.6
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.6e-268 929.5 747 69.2
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.6e-268 929.5 726 70.2
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.7e-268 927.9 767 69.1
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 4.7e-268 927.9 781 68.4
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 7.9e-268 927.2 749 69.7
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 7.9e-268 927.2 746 68.9
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 7.9e-268 927.2 749 70.1
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.0e-267 926.8 746 69.0
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 4.4e-266 921.4 746 68.8
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 4.4e-266 921.4 746 68.8
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.3e-265 919.8 743 68.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.8e-265 918.7 767 68.4
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 3.7e-265 918.3 749 68.5
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 3.1e-264 915.2 734 68.8
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.1e-264 914.8 734 70.2
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 2.0e-263 912.5 746 68.4
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 2.0e-263 912.5 746 68.4
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.6e-263 912.1 749 69.6
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.3e-262 909.8 794 66.5
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.3e-262 909.8 747 67.9
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 6.5e-262 907.5 733 68.9
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.1e-261 906.7 734 68.8
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.5e-261 905.6 741 67.9
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 3.2e-261 905.2 749 67.7
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 7.2e-261 904.0 741 68.0
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 9.4e-261 903.7 727 69.3
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-260 903.3 742 67.9
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 3.6e-260 901.7 726 68.9
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.6e-260 901.7 749 67.7
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 6.1e-260 901.0 738 69.6
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.4e-259 899.8 731 67.9
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.3e-259 899.0 752 66.6
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 5.2e-259 897.9 733 68.6
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.7e-258 893.6 736 68.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 3.7e-257 891.7 738 67.2
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.2e-257 890.6 736 67.8
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.1e-256 890.2 697 70.3
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.8e-256 889.4 731 67.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 5.3e-256 887.9 725 69.0
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 2.6e-255 885.6 724 67.5
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 2.6e-255 885.6 750 67.6
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.7e-254 882.9 748 66.7
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.9e-253 879.4 731 68.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 5.5e-253 877.9 728 67.2
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.2e-252 876.7 717 68.3
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 6.7e-251 870.9 749 65.7
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 3.3e-250 868.6 713 67.7
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 3.3e-250 868.6 713 67.7
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.1e-248 862.1 719 66.9
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.1e-248 860.5 760 63.3
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.0e-247 859.4 724 66.9
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 5.9e-247 857.8 734 66.1
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.9e-245 852.8 735 66.4
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 2.5e-245 852.4 737 65.0
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 7.2e-245 850.9 754 65.0
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.3e-243 845.9 781 63.5
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.3e-241 840.1 726 65.0
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 1.8e-240 836.3 727 64.9
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 7.0e-240 834.3 725 65.2
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 2.8e-236 822.4 726 64.0
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.0e-234 816.2 739 63.3
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.9e-233 811.6 535 80.6
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 7.0e-232 807.7 739 63.9
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 5.9e-231 804.7 773 61.7
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 5.9e-231 804.7 793 60.8
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 2.9e-230 802.4 737 63.1
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.9e-225 785.0 711 63.7
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.5e-213 746.9 718 60.6
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 9.5e-213 744.2 751 57.8
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 2.9e-209 732.6 733 59.1
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 1.2e-207 727.2 726 58.8
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.3e-197 691.4 441 81.4
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 6.0e-191 671.8 723 55.2
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 1.3e-185 654.1 435 84.6
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 4.6e-183 645.6 764 52.9
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 6.5e-169 598.6 678 54.0
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.0e-166 591.3 566 62.0
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 3.4e-162 576.2 372 81.2
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.2e-135 488.0 733 43.9
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 5.9e-130 469.2 434 61.1
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.5e-128 464.5 303 80.2
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.2e-125 454.9 609 47.1
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.2e-120 435.6 599 46.9
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.2e-120 435.6 599 46.9
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.3e-118 430.6 606 46.5
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.6e-117 427.2 518 47.9
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 7.8e-98 362.5 352 57.4
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 6.4e-92 342.8 259 72.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.0e-90 336.3 309 62.8
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 7.8e-90 335.9 280 66.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.6e-87 328.2 576 39.4
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.0e-82 309.7 184 87.5
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.0e-73 282.3 355 49.9
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 4.6e-66 256.9 423 40.9
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 8.4e-60 236.1 555 36.9
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 4.6e-58 230.3 449 39.0
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 7.2e-51 206.5 629 30.0
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.1e-46 192.6 184 61.4
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.0e-46 189.5 579 34.4
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 6.5e-44 183.3 108 81.5
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.5e-35 154.8 131 64.9
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 2.0e-32 145.2 96 72.9
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.6e-32 144.8 96 72.9
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 2.4e-30 138.3 76 94.7
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 1.9e-27 128.6 172 47.1
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 3.6e-26 124.4 73 83.6
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 3.6e-26 124.4 73 83.6
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 5.7e-24 117.1 73 82.2
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-23 115.2 346 33.8
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.8e-23 114.8 222 40.5
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.1e-19 102.8 51 94.1
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.0e-17 96.3 50 94.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 3.7e-15 87.8 61 63.9
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 6.3e-15 87.0 221 35.3
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.4e-14 85.1 61 65.6
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.4e-14 85.1 274 33.6
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.5e-13 81.3 64 71.9
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.5e-13 80.9 84 57.1
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.9e-12 78.2 140 40.0
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.4e-09 69.3 243 32.1
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 4.0e-09 67.8 76 50.0


User provided reference genes

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