Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 2.9e-199 698.4 354 100.0
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.9e-166 589.3 354 84.2
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 1.8e-161 572.8 351 82.1
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 1.0e-159 567.0 351 81.2
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 4.9e-154 548.1 354 78.8
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 5.6e-110 401.7 351 57.8
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 1.0e-106 391.0 354 57.1
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.6e-104 383.6 306 64.4
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 7.9e-104 381.3 351 58.1
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 4.3e-102 375.6 347 57.3
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.4e-102 374.8 340 57.6
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 1.3e-101 374.0 332 58.4
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.7e-101 372.5 341 58.7
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.4e-100 370.5 352 56.0
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.4e-100 370.5 352 54.5
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 3.1e-100 369.4 336 55.7
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 4.1e-100 369.0 367 54.5
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 5.3e-100 368.6 363 55.6
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 6.9e-100 368.2 344 57.8
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.6e-99 366.3 351 55.8
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 1.1e-97 360.9 351 55.8
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 2.5e-97 359.8 338 55.0
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 3.6e-96 355.9 355 54.9
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.4e-95 354.0 301 60.1
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 6.7e-95 351.7 360 53.3
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 2.5e-94 349.7 298 61.1
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 4.3e-94 349.0 344 55.8
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 4.3e-94 349.0 297 60.9
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 7.4e-94 348.2 342 55.0
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 7.4e-94 348.2 333 55.3
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 1.3e-93 347.4 293 60.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.7e-93 347.1 340 55.0
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.2e-93 346.7 332 54.8
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 2.8e-93 346.3 339 53.7
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.7e-93 345.9 342 55.0
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 4.8e-93 345.5 345 55.1
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 6.3e-93 345.1 345 55.1
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 8.2e-93 344.7 350 54.3
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.4e-92 344.0 315 58.4
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.4e-92 344.0 331 53.5
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.4e-92 343.2 354 52.3
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.4e-92 343.2 342 54.7
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 4.1e-92 342.4 339 52.8
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 5.3e-92 342.0 335 54.6
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 6.9e-92 341.7 348 52.9
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 6.9e-92 341.7 314 58.3
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 6.9e-92 341.7 336 54.5
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 3.4e-91 339.3 346 52.9
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 3.4e-91 339.3 351 55.0
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 5.9e-91 338.6 342 54.4
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.7e-90 337.0 357 51.8
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 2.2e-90 336.7 357 53.2
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 3.8e-90 335.9 346 51.7
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 5.0e-90 335.5 348 52.3
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 8.5e-90 334.7 353 51.6
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.4e-89 334.0 347 52.7
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 4.2e-89 332.4 347 53.3
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 2.1e-88 330.1 341 53.4
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 2.1e-88 330.1 354 51.4
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 2.1e-88 330.1 355 49.9
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.6e-88 329.3 353 51.3
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 7.9e-88 328.2 335 49.9
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.8e-87 327.0 319 55.2
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 8.8e-87 324.7 337 50.1
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.5e-86 323.9 271 61.6
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.5e-86 323.9 404 47.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 2.0e-86 323.6 335 50.1
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 2.6e-86 323.2 339 52.5
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 5.7e-86 322.0 335 49.6
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.3e-85 320.9 350 52.3
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.7e-85 320.5 356 50.0
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.7e-85 320.5 356 51.7
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 4.8e-85 318.9 349 50.4
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 8.2e-85 318.2 352 49.7
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.1e-84 317.8 289 55.4
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 1.1e-84 317.8 289 55.0
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.4e-84 317.4 289 54.7
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.4e-84 317.4 356 51.1
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.8e-84 317.0 277 59.6
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 3.1e-84 316.2 289 55.0
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 5.3e-84 315.5 358 49.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.5e-83 313.9 337 50.4
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 7.7e-83 311.6 291 56.7
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.0e-82 311.2 295 50.2
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.9e-82 309.7 308 52.3
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 8.5e-82 308.1 372 47.8
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 2.1e-80 303.5 357 49.3
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.0e-79 301.2 354 49.7
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.8e-79 300.4 360 48.1
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 3.0e-79 299.7 303 55.8
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 6.7e-79 298.5 295 52.9
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 7.4e-78 295.0 366 46.7
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 6.3e-77 292.0 313 50.5
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.8e-76 290.4 351 48.4
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 3.1e-76 289.7 363 47.9
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 6.5e-74 282.0 399 44.6
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 8.5e-74 281.6 368 48.9
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.2e-73 278.5 360 44.7
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 4.4e-70 269.2 326 47.2
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 1.0e-63 248.1 218 56.9
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 2.7e-59 233.4 261 48.3
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 1.9e-57 227.3 193 57.5
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 3.7e-53 213.0 298 41.6
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 4.9e-53 212.6 181 60.2
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 5.9e-51 205.7 298 41.3
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.0e-47 194.9 309 38.8
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 8.3e-45 185.3 298 37.2
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.7e-43 180.3 245 40.0
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.6e-40 171.0 230 43.9
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 7.5e-38 162.2 274 36.5
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.2e-36 156.8 209 42.1
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.5e-35 153.3 200 41.0
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 6.0e-35 152.5 195 45.1
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.0e-35 152.5 200 40.5
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.3e-34 151.4 207 41.1
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.5e-33 147.9 197 42.6
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.2e-31 139.4 210 36.2
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.9e-31 138.7 229 34.5
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 8.9e-31 138.7 217 36.9
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.1e-23 113.6 150 38.0
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 4.2e-20 103.2 178 36.5
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.4e-20 102.8 108 51.9
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 8.1e-16 89.0 88 54.5
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 1.1e-15 88.6 110 44.5
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 2.4e-15 87.4 108 49.1
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 2.4e-12 77.4 119 39.5


User provided reference genes

Program Settings