Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.0e-221 771.2 396 100.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.6e-129 466.8 399 65.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 7.9e-129 464.5 397 66.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-126 457.2 399 64.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.8e-126 456.1 399 63.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.5e-122 443.0 398 63.8
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.7e-113 412.9 400 59.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.9e-107 392.9 400 58.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.9e-66 257.3 399 44.9
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.3e-66 256.5 396 42.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-64 251.1 404 41.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 8.9e-64 248.4 395 41.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-63 248.1 409 41.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.5e-63 247.7 396 41.9
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.6e-63 246.9 403 43.7
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 7.6e-63 245.4 388 42.0
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.9e-62 243.4 400 41.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 8.4e-62 241.9 397 41.8
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.4e-61 241.1 396 40.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.4e-61 240.4 390 40.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.2e-61 240.0 401 40.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.2e-61 240.0 398 40.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.2e-61 239.6 401 40.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.6e-60 237.7 443 39.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.1e-60 237.3 398 39.4
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.1e-60 237.3 398 41.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.7e-60 236.9 400 41.0
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.5e-60 236.5 420 40.7
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.0e-59 235.0 400 39.8
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-59 234.6 404 40.6
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.7e-59 234.2 402 40.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.9e-59 233.0 392 41.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.3e-58 229.9 399 39.3
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.3e-58 229.6 409 41.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.6e-58 229.2 400 39.8
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.6e-57 226.5 400 39.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-56 224.9 402 40.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.1e-56 224.9 402 39.6
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.1e-56 224.9 400 39.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.4e-56 223.8 402 40.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-55 221.5 399 39.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.4e-55 219.9 407 37.3
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.4e-55 219.5 400 38.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.7e-54 217.6 385 39.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 4.9e-54 216.1 402 38.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.4e-54 215.7 450 35.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-53 214.5 395 36.5
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-53 214.5 401 38.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.9e-53 214.2 405 39.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.9e-53 214.2 395 38.5
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-53 213.8 407 37.8
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.2e-53 213.0 395 36.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.2e-52 211.5 399 37.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.1e-52 210.7 394 37.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.7e-51 207.6 419 37.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.5e-50 203.8 403 39.5
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.6e-47 193.7 362 38.7
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.8e-47 192.6 397 37.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.2e-46 190.7 389 35.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.3e-45 185.3 390 32.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 7.9e-44 182.2 392 36.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.3e-43 180.6 457 33.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.0e-43 180.3 395 34.9
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.9e-43 179.9 409 35.2
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.1e-43 179.5 391 34.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.7e-43 179.1 395 35.2
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.4e-42 175.6 408 34.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.1e-41 174.1 397 34.5
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.1e-41 174.1 392 34.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-41 173.7 394 34.5
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.8e-41 173.7 391 34.5
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-40 171.8 386 33.9
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.1e-40 170.2 389 33.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.0e-40 169.9 351 36.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.0e-40 169.9 351 36.2
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-39 168.3 390 32.8
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.5e-39 167.9 388 34.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 7.6e-39 165.6 407 31.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.3e-38 164.9 127 63.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.2e-38 164.1 395 33.2
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.4e-38 162.2 401 31.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.9e-37 161.0 407 34.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.5e-37 160.6 397 32.5
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.2e-37 160.2 149 55.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 7.1e-37 159.1 394 32.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.1e-37 159.1 401 33.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.7e-36 157.1 407 34.9
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.5e-36 156.8 403 32.3
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.5e-36 156.8 387 31.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-35 154.5 392 30.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 3.9e-35 153.3 395 32.2
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 3.9e-35 153.3 395 32.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.1e-35 152.9 221 39.8
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.1e-35 152.9 116 63.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-35 152.1 395 31.9
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.5e-34 151.4 397 31.5
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-34 151.4 157 56.1
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.3e-34 150.2 163 54.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 9.6e-34 148.7 396 31.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.8e-33 146.4 172 50.0
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.2e-33 145.6 391 29.4
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.0e-32 143.3 306 35.3
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 9.0e-32 142.1 112 58.9
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.0e-30 138.7 123 56.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.7e-30 137.9 161 48.4
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.2e-30 137.5 318 34.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.9e-30 137.1 366 32.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.8e-30 136.7 152 50.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 5.0e-30 136.3 391 29.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-29 135.2 421 32.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.2e-29 133.7 271 35.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 4.2e-29 133.3 159 47.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.3e-29 132.1 397 30.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-28 131.7 111 55.9
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-28 131.7 207 39.1
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-28 131.0 111 55.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-28 131.0 111 55.9
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.1e-28 131.0 169 44.4
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.7e-28 130.6 139 48.9
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.5e-28 130.2 393 29.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 3.5e-28 130.2 152 48.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.5e-28 130.2 217 37.3
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.6e-28 129.8 389 30.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 7.9e-28 129.0 247 36.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.0e-27 128.6 247 36.8
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-27 127.9 390 29.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.9e-27 126.7 349 30.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.1e-27 126.3 105 63.8
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.7e-27 125.9 398 30.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 8.7e-27 125.6 237 36.7
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 8.7e-27 125.6 237 36.7
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-26 124.4 217 41.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 7.4e-26 122.5 218 38.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 9.7e-26 122.1 217 41.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.3e-25 121.7 104 61.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.3e-25 121.7 104 61.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-25 121.7 226 37.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.3e-25 121.7 217 41.0
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.6e-25 121.3 395 30.6
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 8.2e-25 119.0 289 34.9
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 8.2e-25 119.0 289 34.9
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 8.2e-25 119.0 289 34.9
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.1e-24 118.6 111 57.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.4e-24 117.5 127 55.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.1e-24 116.7 108 61.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-23 115.2 175 40.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.4e-23 113.6 154 48.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.0e-22 112.1 341 28.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.2e-22 110.9 453 27.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 3.8e-22 110.2 151 41.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.0e-22 109.8 157 45.9
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 8.5e-22 109.0 101 46.5
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.4e-21 108.2 163 45.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-21 107.8 71 70.4
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.9e-21 107.8 181 41.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.2e-20 105.1 175 41.1
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.1e-20 104.4 108 54.6
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.6e-20 103.2 508 25.2
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.0e-19 102.1 130 46.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.3e-18 96.7 138 37.7
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.7e-17 94.7 71 60.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.1e-16 92.0 201 32.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 5.3e-16 89.7 401 25.7
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 6.5e-14 82.8 238 29.8
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.5e-14 82.8 100 37.0
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.1e-12 77.8 78 47.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.5e-10 71.6 118 38.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.1e-08 62.4 40 67.5
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-07 62.0 104 35.6
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 5.9e-07 59.7 104 35.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.0e-06 58.9 96 38.5
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-06 58.2 104 33.7
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 8.5e-06 55.8 332 23.8


User provided reference genes

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