Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 7.4e-107 390.6 202 100.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.5e-67 260.0 156 82.1
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.6e-67 259.2 212 69.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 7.5e-67 257.7 206 67.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.8e-67 257.3 158 81.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.7e-66 256.5 155 81.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.7e-66 255.4 202 68.8
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 8.3e-66 254.2 194 68.6
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.9e-65 253.1 155 80.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.1e-65 251.9 194 68.6
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 4.1e-65 251.9 209 67.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.4e-65 251.5 155 80.6
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 7.0e-65 251.1 157 77.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.2e-64 250.4 159 76.1
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.2e-64 250.4 196 66.8
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.6e-64 250.0 200 64.5
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.0e-64 249.6 208 67.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.7e-64 249.2 215 63.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.5e-64 248.8 156 76.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.0e-64 248.1 205 67.3
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 6.0e-64 248.1 156 78.2
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 6.0e-64 248.1 158 76.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.0e-64 248.1 214 63.6
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 7.8e-64 247.7 173 72.3
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.0e-63 247.3 186 68.3
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.0e-63 247.3 215 63.7
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.0e-63 247.3 157 75.8
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.3e-63 246.9 161 76.4
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.3e-63 246.9 157 75.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.7e-63 246.5 188 69.7
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.3e-63 246.1 205 66.8
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.3e-63 246.1 204 65.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.0e-63 245.7 206 65.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.0e-63 245.7 204 66.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.0e-63 245.7 158 77.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.9e-63 245.4 198 65.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.9e-63 245.4 183 67.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.9e-63 245.4 201 68.2
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.9e-63 245.4 201 68.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 6.6e-63 244.6 156 78.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 6.6e-63 244.6 210 62.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.6e-63 244.2 209 64.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-62 243.8 202 65.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.5e-62 243.4 158 77.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.5e-62 243.4 202 66.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.9e-62 243.0 201 67.7
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.5e-62 242.7 157 75.2
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.3e-62 241.9 196 65.8
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.6e-62 241.5 199 67.3
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 7.3e-62 241.1 199 65.8
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.2e-61 240.4 202 65.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.2e-61 240.4 202 62.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.6e-61 240.0 159 77.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.1e-61 239.6 157 75.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.8e-61 239.2 158 74.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.8e-61 239.2 157 75.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.6e-61 238.8 159 76.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.7e-61 238.4 156 75.6
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.7e-61 238.4 204 64.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.2e-61 238.0 213 62.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.2e-61 238.0 198 65.7
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-60 236.9 159 74.2
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 76.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 76.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 76.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 76.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 76.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-60 236.9 147 80.3
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-60 236.5 147 80.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-60 236.5 147 80.3
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-60 236.5 157 76.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-60 236.1 154 76.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.3e-60 236.1 154 76.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.3e-60 236.1 154 76.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.3e-60 236.1 157 75.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 3.1e-60 235.7 204 63.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.1e-60 235.7 155 71.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.0e-60 235.3 173 69.4
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 4.0e-60 235.3 200 65.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 6.8e-60 234.6 211 60.7
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.8e-60 234.6 158 74.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.8e-60 234.6 187 64.7
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.9e-60 234.2 156 75.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-59 233.8 207 63.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-59 233.8 158 74.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-59 233.4 204 64.2
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-59 233.4 156 75.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.6e-59 232.6 156 74.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.4e-59 232.3 207 62.8
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-59 232.3 207 62.8
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-59 232.3 207 62.8
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 3.4e-59 232.3 204 63.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.4e-59 231.9 158 73.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.9e-58 228.4 159 71.7
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.4e-58 228.0 159 71.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.2e-57 224.2 198 60.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 9.2e-57 224.2 201 60.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.2e-56 223.8 155 71.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.1e-56 223.0 158 70.9
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-56 223.0 155 74.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.7e-56 222.6 163 69.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.9e-55 218.8 210 60.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.1e-54 217.2 157 68.8
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-54 217.2 154 72.1
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-54 215.7 167 68.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.3e-54 215.7 163 66.3
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 9.5e-54 214.2 187 63.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.6e-53 213.4 268 47.4
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.4e-52 210.3 122 82.8
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.1e-52 209.1 200 60.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.4e-51 205.3 157 65.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 4.4e-51 205.3 163 66.3
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.3e-50 203.8 194 58.8
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.9e-49 199.9 261 47.9
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 7.1e-49 198.0 156 64.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 9.2e-49 197.6 128 75.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.7e-48 196.1 192 58.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.3e-46 188.7 148 66.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.8e-45 186.0 149 62.4
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.8e-45 186.0 149 62.4
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.7e-45 185.3 213 50.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.7e-45 185.3 102 89.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.0e-44 182.2 118 71.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 8.9e-44 181.0 118 70.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 4.9e-42 175.3 118 72.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 8.4e-42 174.5 212 49.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.7e-39 166.8 130 67.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.4e-35 152.1 93 76.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.9e-34 149.4 112 60.7
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.9e-34 148.7 122 56.6
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 6.4e-34 148.3 210 44.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-33 146.7 122 55.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.4e-33 145.2 115 57.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.6e-32 142.1 81 84.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.1e-30 137.5 106 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.5e-30 137.1 112 57.1
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.2e-29 131.7 134 61.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 4.0e-28 129.0 134 53.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.4e-26 121.7 80 73.8
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.2e-25 119.0 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.2e-25 119.0 67 85.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.0e-20 101.3 80 67.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.6e-16 90.5 72 61.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-12 77.4 50 72.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-10 68.9 114 36.0


User provided reference genes

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