Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 8.1e-171 603.6 293 100.0
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.1e-150 535.8 293 86.7
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 2.6e-145 518.8 295 85.4
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 8.4e-144 513.8 295 84.7
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 4.8e-139 498.0 294 82.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 9.1e-122 440.7 300 71.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.9e-120 435.6 293 71.3
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 8.5e-120 434.1 295 69.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 7.2e-119 431.0 286 71.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.6e-118 429.9 279 73.8
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 3.6e-118 428.7 288 72.6
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 6.1e-118 427.9 278 73.0
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 2.0e-116 422.9 296 69.3
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.0e-116 422.9 291 69.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.6e-116 422.5 268 73.9
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.4e-116 421.8 284 71.5
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.4e-116 421.0 282 71.3
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.7e-115 419.9 282 72.3
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.7e-115 419.9 287 71.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.8e-115 418.3 297 69.4
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.8e-115 418.3 293 69.3
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 8.2e-115 417.5 295 68.5
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-114 416.8 282 72.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.4e-114 416.8 265 73.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.1e-114 415.2 295 68.8
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 5.3e-114 414.8 291 68.0
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 5.3e-114 414.8 287 70.7
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.3e-114 414.8 295 68.5
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 9.1e-114 414.1 286 69.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.6e-113 413.3 295 68.5
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.5e-113 411.8 259 76.1
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.5e-113 411.8 295 68.8
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 5.9e-113 411.4 289 69.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-112 410.2 267 74.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.7e-112 409.8 301 67.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 2.2e-112 409.5 292 68.5
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 5.0e-112 408.3 287 69.0
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.5e-112 407.9 281 70.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 8.5e-112 407.5 298 66.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.5e-111 406.0 289 67.5
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 5.5e-111 404.8 287 67.9
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.2e-111 404.4 292 68.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 9.4e-111 404.1 299 67.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.4e-111 404.1 292 68.5
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 9.4e-111 404.1 301 65.8
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.6e-110 403.3 283 68.6
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.1e-110 402.9 283 68.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.1e-110 402.9 283 68.9
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 6.1e-110 401.4 279 69.5
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 6.1e-110 401.4 293 66.2
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 6.1e-110 401.4 293 66.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 8.0e-110 401.0 300 67.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 8.0e-110 401.0 284 67.6
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.3e-109 399.4 279 69.2
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 5.2e-109 398.3 264 72.7
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 5.2e-109 398.3 286 67.1
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 5.2e-109 398.3 253 72.7
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 6.7e-109 397.9 292 66.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 8.8e-109 397.5 295 66.4
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-108 396.7 292 66.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.6e-108 396.0 291 65.6
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.7e-107 393.3 277 66.8
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.2e-107 392.9 270 69.6
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.2e-107 392.9 277 66.8
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.8e-107 391.7 277 67.1
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.1e-106 390.6 289 66.1
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.4e-106 390.2 245 75.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 9.1e-106 387.5 295 65.4
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.6e-105 386.7 276 65.9
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.0e-105 386.3 260 71.5
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.3e-104 383.6 272 68.0
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.7e-104 383.3 287 65.5
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.1e-103 380.6 275 65.5
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.2e-103 377.9 294 61.9
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.1e-102 376.3 288 63.2
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.1e-102 376.3 291 62.2
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.4e-101 373.6 290 64.1
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 6.8e-101 371.3 243 74.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.4e-100 369.0 232 73.3
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.7e-100 368.2 266 67.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-98 363.6 282 65.6
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-96 356.7 280 61.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.2e-94 350.5 244 72.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-94 349.4 206 79.1
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.2e-92 344.0 258 63.6
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 5.7e-92 341.7 287 60.3
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.3e-91 340.5 377 47.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.2e-91 339.7 229 72.9
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.8e-91 339.3 287 58.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 3.7e-91 339.0 258 63.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 8.3e-91 337.8 265 64.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 3.1e-90 335.9 228 71.1
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.2e-89 334.0 234 67.9
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 7.8e-89 331.3 245 60.4
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.3e-88 329.7 275 56.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 3.6e-86 322.4 282 52.5
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.2e-82 309.3 281 54.8
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 2.7e-81 306.2 280 53.9
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 2.7e-81 306.2 254 57.5
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 2.7e-81 306.2 254 57.5
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.0e-80 304.3 269 54.6
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.0e-80 304.3 269 54.6
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.0e-80 304.3 269 54.6
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.7e-80 303.5 261 57.1
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.7e-80 303.5 272 55.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.0e-80 302.8 208 70.2
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.9e-80 302.4 208 68.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 6.6e-80 301.6 247 59.5
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 8.6e-80 301.2 254 56.3
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-79 300.4 253 56.9
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.9e-79 300.1 252 57.5
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.9e-79 300.1 261 55.9
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 7.0e-74 281.6 273 52.4
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.3e-72 277.3 240 60.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.6e-72 274.6 249 55.4
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.0e-69 265.8 226 56.2
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.1e-66 255.0 256 51.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-65 253.8 211 57.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.2e-59 233.4 273 47.3
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.8e-59 232.6 199 55.3
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.5e-55 219.9 238 47.1
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 7.3e-55 218.4 230 48.3
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.1e-53 214.5 149 67.8
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 2.9e-51 206.5 178 63.5
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.7e-41 173.3 121 66.1
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 5.3e-37 159.1 285 35.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.5e-36 157.5 130 58.5
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.8e-29 134.0 136 53.7
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.9e-27 126.7 218 35.3
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 3.4e-20 103.2 165 36.4
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.3e-19 101.3 158 37.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.2e-19 100.5 77 62.3
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-18 97.8 108 49.1
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 7.9e-17 92.0 60 70.0
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 3.1e-13 80.1 43 74.4
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.4e-12 76.6 48 75.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.4e-12 76.6 77 48.1
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 5.1e-08 62.8 246 26.8
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 1.7e-06 57.8 94 40.4


User provided reference genes

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