Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 2.0e-127 459.1 236 100.0
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 3.7e-89 332.0 234 72.6
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 4.2e-85 318.5 204 77.9
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.8e-83 313.2 234 68.8
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 7.0e-64 248.1 224 58.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 7.0e-64 248.1 234 57.7
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 5.9e-63 245.0 207 61.8
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.0e-62 244.2 233 55.8
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.3e-62 243.8 242 57.0
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.2e-62 243.0 210 60.0
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.2e-62 243.0 212 59.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 3.8e-62 242.3 235 56.6
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 5.0e-62 241.9 209 58.9
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 6.5e-62 241.5 226 56.2
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 6.5e-62 241.5 231 56.7
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 6.5e-62 241.5 231 55.8
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 8.5e-62 241.1 211 61.6
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.5e-61 239.6 205 62.4
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.2e-61 239.2 209 61.2
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 4.2e-61 238.8 224 56.7
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 5.5e-61 238.4 208 60.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.2e-61 238.0 215 59.5
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 9.4e-61 237.7 213 60.6
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.2e-60 237.3 205 61.5
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-60 236.9 224 56.7
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 4.7e-60 235.3 212 58.5
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 1.8e-59 233.4 211 58.8
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.8e-59 233.4 208 57.7
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.8e-59 233.4 224 55.8
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 2.3e-59 233.0 209 60.3
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 3.0e-59 232.6 204 59.8
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 3.0e-59 232.6 229 55.0
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.8e-59 231.1 245 55.1
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 8.8e-59 231.1 204 60.8
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 8.8e-59 231.1 212 59.9
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 1.1e-58 230.7 208 58.7
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 2.0e-58 229.9 234 56.0
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.0e-58 229.9 211 57.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 3.3e-58 229.2 215 59.5
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 4.4e-58 228.8 212 57.5
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 4.4e-58 228.8 206 58.3
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 4.4e-58 228.8 203 57.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 4.4e-58 228.8 203 57.6
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 5.7e-58 228.4 208 55.8
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 7.5e-58 228.0 211 57.3
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 7.5e-58 228.0 212 56.1
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 9.7e-58 227.6 233 51.5
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 9.7e-58 227.6 204 58.3
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 9.7e-58 227.6 204 58.3
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 9.7e-58 227.6 232 54.3
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 9.7e-58 227.6 212 56.6
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 9.7e-58 227.6 203 57.1
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.3e-57 227.3 204 58.8
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 1.3e-57 227.3 204 58.8
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.3e-57 227.3 215 57.7
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 1.3e-57 227.3 227 52.9
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.7e-57 226.9 234 56.4
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 2.2e-57 226.5 212 57.5
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 2.8e-57 226.1 245 52.2
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 3.7e-57 225.7 211 57.3
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.7e-57 225.7 203 57.1
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.7e-57 225.7 234 56.0
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 4.8e-57 225.3 239 53.1
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 8.2e-57 224.6 206 58.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 8.2e-57 224.6 194 58.2
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.1e-56 224.2 204 58.3
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.1e-56 224.2 203 56.7
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.8e-56 223.4 228 53.5
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.4e-56 223.0 206 57.3
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 2.4e-56 223.0 207 57.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 2.4e-56 223.0 212 56.6
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 2.4e-56 223.0 208 57.7
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 3.1e-56 222.6 207 57.0
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 4.1e-56 222.2 211 56.4
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.0e-56 221.5 204 58.8
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 9.1e-56 221.1 205 56.6
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.2e-55 220.7 209 55.5
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.2e-55 220.7 211 55.9
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.0e-55 219.9 227 51.5
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.0e-55 219.9 204 58.3
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.0e-55 219.9 208 54.3
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 3.5e-55 219.2 206 56.8
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 5.9e-55 218.4 232 51.7
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 7.7e-55 218.0 215 55.3
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.7e-55 218.0 208 53.8
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 3.8e-54 215.7 206 56.8
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 5.0e-54 215.3 211 55.9
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 5.0e-54 215.3 232 52.2
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-53 213.0 231 52.4
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-53 213.0 226 53.5
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 3.2e-53 212.6 207 53.6
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 3.2e-53 212.6 209 54.5
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 3.2e-53 212.6 232 52.6
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.5e-53 211.8 204 57.4
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 5.5e-53 211.8 209 53.1
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 2.1e-52 209.9 175 63.4
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 2.7e-52 209.5 259 48.6
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 3.6e-52 209.1 143 72.7
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 3.6e-52 209.1 211 52.6
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.0e-51 207.6 209 53.6
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.4e-51 207.2 210 55.7
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.8e-51 206.8 236 49.6
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 2.3e-51 206.5 147 67.3
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 4.0e-51 205.7 244 46.7
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 5.2e-51 205.3 151 68.9
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 5.2e-51 205.3 146 67.1
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.5e-50 203.8 168 61.9
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-50 203.8 200 54.5
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.1e-48 197.6 157 61.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.8e-48 196.8 204 49.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.1e-48 196.1 290 42.1
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 7.0e-48 194.9 147 63.9
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 9.1e-48 194.5 143 67.1
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.7e-46 190.3 230 45.2
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 5.0e-46 188.7 210 51.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.9e-45 186.8 143 62.2
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 3.2e-45 186.0 128 69.5
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 3.2e-45 186.0 263 46.8
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 6.1e-44 181.8 231 42.4
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 8.0e-44 181.4 130 65.4
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.0e-38 162.2 157 53.5
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 5.6e-37 158.7 215 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 3.6e-36 156.0 207 39.1
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.7e-36 155.6 156 53.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.1e-36 155.2 194 51.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 7.5e-34 148.3 196 47.4
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 5.4e-32 142.1 196 45.9
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.3e-30 136.7 96 68.8
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 5.0e-30 135.6 101 63.4
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 6.6e-30 135.2 96 67.7
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 3.1e-27 126.3 136 44.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 4.4e-18 95.9 200 33.5
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.6e-15 85.9 77 54.5
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.6e-14 82.0 151 39.1
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.1e-13 81.3 125 32.8
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-11 74.3 66 56.1
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 1.8e-11 73.9 50 66.0
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.1e-11 73.2 54 63.0
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 4.0e-11 72.8 135 37.0
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 4.9e-09 65.9 45 71.1
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.9e-08 63.9 46 60.9
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.9e-08 63.9 108 33.3
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.1e-08 62.8 56 51.8
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 9.2e-08 61.6 206 29.1
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 9.2e-08 61.6 93 40.9
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 2.7e-07 60.1 111 36.9
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.5e-07 59.7 80 40.0
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.6e-07 59.3 89 38.2


User provided reference genes

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