Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-56 222.6 110 100.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.1e-51 204.5 108 88.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 7.8e-50 200.3 110 88.2
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.5e-48 196.1 107 88.8
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.6e-42 174.5 107 78.5
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 6.6e-41 170.6 107 75.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.1e-40 169.9 107 74.8
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.2e-39 166.4 107 72.0
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 2.1e-39 165.6 107 72.9
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.4e-38 162.9 108 72.2
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 5.2e-38 161.0 108 73.1
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 8.9e-38 160.2 107 72.0
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.2e-37 159.8 107 68.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.5e-37 159.5 108 69.4
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.0e-37 159.1 107 68.2
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.6e-37 158.7 108 71.3
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 7.5e-37 157.1 107 70.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 7.5e-37 157.1 107 70.1
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 9.8e-37 156.8 107 68.2
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 9.8e-37 156.8 103 70.9
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.7e-36 156.0 108 66.7
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 70.4
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.9e-36 155.2 109 67.9
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.9e-36 155.2 107 65.4
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 6.4e-36 154.1 108 64.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 8.3e-36 153.7 108 66.7
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.1e-35 153.3 108 67.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.1e-35 153.3 108 68.5
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 5.4e-35 151.0 107 66.4
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 9.2e-35 150.2 108 65.7
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 68.5
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.1e-34 149.1 108 67.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.1e-34 149.1 107 63.6
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-34 148.7 107 64.5
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.5e-34 148.3 109 68.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 4.6e-34 147.9 107 63.6
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.6e-34 147.9 108 65.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.8e-34 147.1 107 62.6
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.0e-33 146.7 107 67.3
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.3e-33 146.4 107 67.3
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 64.8
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.7e-33 146.0 107 60.7
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 3.0e-33 145.2 107 62.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 3.0e-33 145.2 108 64.8
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.6e-33 144.1 107 62.6
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 6.6e-33 144.1 108 59.3
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 6.6e-33 144.1 108 60.2
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 6.6e-33 144.1 107 60.7
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 6.6e-33 144.1 108 63.9
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 8.6e-33 143.7 109 64.2
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 8.6e-33 143.7 108 64.8
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 8.6e-33 143.7 107 62.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 8.6e-33 143.7 106 61.3
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-32 143.3 107 60.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.1e-32 143.3 107 59.8
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 64.8
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.5e-32 142.9 107 61.7
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.5e-32 142.9 107 62.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.5e-32 142.9 107 62.6
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.5e-32 142.9 107 62.6
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 61.1
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.3e-32 141.7 108 59.3
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.3e-32 141.4 108 63.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.3e-32 141.4 108 63.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 7.3e-32 140.6 107 57.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 9.5e-32 140.2 107 57.9
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 9.5e-32 140.2 107 57.0
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.5e-32 140.2 108 61.1
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 59.8
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.2e-31 139.8 109 61.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 59.8
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.8e-31 138.7 108 61.1
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 2.8e-31 138.7 108 62.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 3.6e-31 138.3 107 57.9
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.6e-31 138.3 107 57.9
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 3.6e-31 138.3 106 60.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 4.7e-31 137.9 103 63.1
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.7e-31 137.9 99 70.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 6.2e-31 137.5 109 61.5
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 8.1e-31 137.1 107 59.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.1e-30 136.7 111 57.7
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 59.3
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.8e-30 136.0 107 59.8
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 56.1
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 3.1e-30 135.2 107 60.7
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 4.0e-30 134.8 107 57.0
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.2e-30 134.4 107 59.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 5.2e-30 134.4 107 59.8
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 6.8e-30 134.0 108 60.2
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.8e-30 134.0 107 57.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 6.8e-30 134.0 85 81.2
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 6.8e-30 134.0 108 61.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.9e-30 133.7 107 56.1
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 8.9e-30 133.7 107 57.0
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.2e-29 133.3 107 57.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.2e-29 133.3 107 60.7
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 56.1
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.6e-29 132.1 108 62.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.6e-29 132.1 108 59.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 9.9e-29 130.2 107 55.1
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 56.5
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.1e-27 126.7 107 55.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.4e-27 125.6 95 58.9
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.4e-27 125.6 98 57.1
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.2e-27 125.2 107 54.2
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 54.6
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 5.4e-27 124.4 85 64.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 9.2e-27 123.6 108 53.7
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.2e-26 123.2 89 64.0
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.6e-26 122.9 90 64.4
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.1e-26 122.5 111 56.8
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.7e-26 122.1 90 63.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 3.5e-26 121.7 85 68.2
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.5e-26 121.7 108 52.8
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.6e-26 121.3 108 53.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 4.6e-26 121.3 90 60.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 6.0e-26 120.9 90 60.0
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 6.0e-26 120.9 108 52.8
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 7.8e-26 120.6 90 63.3
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-25 119.8 111 50.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 8.6e-25 117.1 85 62.4
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 8.6e-25 117.1 107 51.4
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 52.3
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.9e-24 115.9 91 60.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.5e-24 115.5 88 61.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 2.5e-24 115.5 108 50.9
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 7.3e-24 114.0 88 61.4
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.2e-23 113.2 85 61.2
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.2e-23 113.2 85 61.2
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.8e-23 112.1 107 47.7
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.6e-23 111.7 107 57.0
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 6.2e-23 110.9 86 61.6
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.1e-22 110.2 86 57.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.0e-22 108.2 86 60.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 6.8e-22 107.5 87 59.8
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.8e-22 107.5 89 57.3
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.9e-20 101.3 85 55.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.1e-19 100.1 76 53.9
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 5.4e-19 97.8 108 46.3
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 9.2e-19 97.1 87 55.2
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.7e-18 95.5 109 42.2
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.5e-18 95.1 87 49.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.6e-18 94.7 65 70.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 6.6e-17 90.9 85 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.5e-16 89.0 109 42.2
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.3e-16 88.2 109 41.3
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.1e-14 83.6 81 51.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 4.0e-14 81.6 73 58.9
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 9.0e-14 80.5 87 51.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 5.8e-13 77.8 110 40.9
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.7e-12 76.3 91 42.9
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.4e-11 73.2 56 64.3
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 6.0e-10 67.8 109 33.0
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 1.8e-06 56.2 64 43.8
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.8e-06 56.2 64 43.8
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 2.4e-06 55.8 41 58.5


User provided reference genes

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