Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.3e-75 286.2 138 100.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.1e-53 213.4 138 74.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.7e-49 199.5 136 70.6
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 8.2e-49 197.2 136 72.8
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.1e-32 142.1 129 55.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.1e-32 141.7 127 55.9
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.7e-31 139.0 128 56.2
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.7e-31 137.5 131 55.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 129 52.7
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.3e-30 136.7 129 53.5
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.9e-30 135.6 127 56.7
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 3.8e-30 135.2 115 58.3
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 6.6e-30 134.4 130 51.5
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.6e-30 134.4 129 52.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 8.6e-30 134.0 125 52.8
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.1e-29 133.7 129 51.2
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.1e-29 133.7 130 51.5
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.1e-29 133.7 129 51.2
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.5e-29 133.3 131 52.7
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.5e-29 133.3 129 51.2
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.5e-29 133.3 99 61.6
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.9e-29 132.9 129 54.3
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.9e-29 132.9 123 51.2
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.5e-29 132.5 125 52.8
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.3e-29 132.1 134 50.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 3.3e-29 132.1 131 50.4
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 3.3e-29 132.1 125 56.8
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.3e-29 132.1 132 53.8
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.5e-29 131.3 130 53.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.5e-29 131.3 130 53.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 5.5e-29 131.3 129 52.7
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.5e-29 131.3 130 53.8
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-28 130.2 131 51.1
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.2e-28 130.2 130 54.6
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.2e-28 130.2 130 55.4
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.1e-28 129.4 140 50.0
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.1e-28 129.4 131 53.4
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.8e-28 129.0 130 53.1
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.6e-28 128.6 126 53.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 8.0e-28 127.5 134 49.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 8.0e-28 127.5 132 52.3
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 8.0e-28 127.5 130 50.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.0e-27 127.1 129 51.9
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.8e-27 126.3 131 51.1
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.8e-27 126.3 125 50.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.8e-27 126.3 132 51.5
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.3e-27 125.9 100 59.0
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 3.0e-27 125.6 129 47.3
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 3.0e-27 125.6 129 48.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 3.0e-27 125.6 129 48.8
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 5.2e-27 124.8 143 49.7
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.2e-27 124.8 126 52.4
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 6.8e-27 124.4 122 50.0
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 6.8e-27 124.4 133 50.4
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 8.9e-27 124.0 99 59.6
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.5e-26 123.2 87 70.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.0e-26 122.9 129 48.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 3.4e-26 122.1 142 49.3
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.5e-26 120.9 131 49.6
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 7.5e-26 120.9 122 50.8
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 7.5e-26 120.9 127 52.8
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.5e-26 120.9 135 46.7
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.5e-26 120.9 131 46.6
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 9.8e-26 120.6 114 52.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.3e-25 120.2 86 65.1
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-25 120.2 129 50.4
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.3e-25 120.2 131 51.1
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.2e-25 119.4 129 50.4
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.2e-25 119.4 85 65.9
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-25 119.4 85 65.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-25 119.4 86 65.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.9e-25 119.0 138 46.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 2.9e-25 119.0 110 56.4
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 3.7e-25 118.6 129 46.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.9e-25 118.2 133 53.4
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 4.9e-25 118.2 128 46.1
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 6.3e-25 117.9 129 46.5
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 6.3e-25 117.9 127 49.6
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.3e-25 117.9 124 51.6
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 8.3e-25 117.5 131 49.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.1e-24 117.1 129 48.1
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.4e-24 116.7 122 46.7
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.2e-24 115.5 131 49.6
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 4.1e-24 115.2 133 45.1
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.1e-24 115.2 119 51.3
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 5.4e-24 114.8 118 49.2
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 7.0e-24 114.4 101 59.4
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 9.2e-24 114.0 107 54.2
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.6e-23 113.2 99 55.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.7e-23 112.5 129 45.7
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.7e-23 112.5 111 55.9
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.5e-23 112.1 119 48.7
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 5.9e-23 111.3 116 50.9
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.3e-22 110.2 127 48.8
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.3e-22 110.2 129 48.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.3e-22 109.4 101 58.4
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.3e-22 109.4 129 44.2
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.9e-22 109.0 98 55.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 5.0e-22 108.2 116 49.1
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.0e-22 108.2 112 50.0
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 6.6e-22 107.8 132 48.5
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.6e-22 107.5 130 46.9
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 8.6e-22 107.5 118 48.3
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-21 107.1 123 43.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-21 107.1 123 43.9
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.5e-21 106.7 92 59.8
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 5.6e-21 104.8 69 65.2
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 7.3e-21 104.4 129 48.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.2e-20 103.6 85 58.8
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.6e-20 103.2 107 49.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.8e-20 102.4 126 43.7
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.0e-20 100.9 158 41.1
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.0e-19 100.5 82 63.4
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-19 100.5 57 77.2
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.4e-19 100.1 114 50.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.8e-19 99.8 61 73.8
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.5e-18 96.7 178 38.2
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.5e-18 96.7 113 46.9
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.0e-18 96.3 53 75.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.6e-18 95.9 119 50.4
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.6e-18 95.9 53 75.5
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 3.4e-18 95.5 112 49.1
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.4e-18 95.5 132 43.2
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.4e-18 95.5 132 43.2
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 4.4e-18 95.1 129 41.1
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.3e-17 93.6 78 61.5
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.3e-17 93.6 51 78.4
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 4.9e-17 91.7 114 44.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.4e-16 89.4 164 36.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 4.6e-15 85.1 116 45.7
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 7.8e-15 84.3 83 50.6
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.3e-14 83.6 95 44.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 3.0e-14 82.4 51 70.6
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 3.9e-14 82.0 41 82.9
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 6.6e-14 81.3 51 64.7
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.6e-12 76.6 110 46.4
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.1e-12 76.3 115 46.1
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 4.7e-12 75.1 113 42.5
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.1e-11 73.9 99 45.5
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 4.0e-11 72.0 49 61.2
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.7e-09 65.5 40 72.5
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 6.4e-09 64.7 97 42.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 6.4e-09 64.7 38 73.7
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 9.2e-08 60.8 105 39.0
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 1.0e-06 57.4 114 36.0


User provided reference genes

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