Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 6.3e-88 327.4 166 100.0
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 4.3e-76 288.1 161 89.4
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 3.6e-75 285.0 166 85.5
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.3e-69 266.5 166 79.5
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.5e-68 263.1 160 82.5
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 4.3e-68 261.5 154 83.1
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 7.3e-68 260.8 163 79.8
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.8e-67 258.8 158 82.9
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 5.2e-66 254.6 161 77.0
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 6.8e-66 254.2 158 79.7
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.5e-65 253.1 155 80.6
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.5e-65 253.1 159 79.2
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.5e-65 253.1 159 79.2
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.5e-65 253.1 158 78.5
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 1.5e-65 253.1 154 81.8
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 2.0e-65 252.7 155 80.6
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.6e-65 252.3 153 80.4
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.6e-65 252.3 161 75.8
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 2.6e-65 252.3 155 81.3
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.4e-65 251.9 156 78.2
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 3.4e-65 251.9 155 81.9
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 7.5e-65 250.8 155 81.9
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 7.5e-65 250.8 161 76.4
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 7.5e-65 250.8 158 78.5
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 9.9e-65 250.4 147 82.3
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.3e-64 250.0 155 78.7
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.7e-64 249.6 154 80.5
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.2e-64 249.2 155 80.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 2.9e-64 248.8 152 78.9
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 2.9e-64 248.8 159 78.0
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 3.7e-64 248.4 162 74.7
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 4.9e-64 248.1 152 80.3
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.9e-64 248.1 155 78.1
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 6.4e-64 247.7 158 77.8
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 6.4e-64 247.7 157 77.1
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 6.4e-64 247.7 158 76.6
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 6.4e-64 247.7 156 78.2
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 8.3e-64 247.3 144 84.0
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 8.3e-64 247.3 155 79.4
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.1e-63 246.9 163 76.7
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 1.1e-63 246.9 156 77.6
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.1e-63 246.9 155 78.1
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.4e-63 246.5 156 78.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.9e-63 246.1 161 74.5
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.9e-63 246.1 159 74.8
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 1.9e-63 246.1 156 77.6
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.9e-63 246.1 161 75.2
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.4e-63 245.7 159 76.1
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 3.2e-63 245.4 151 81.5
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 3.2e-63 245.4 151 78.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 3.2e-63 245.4 155 76.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 3.2e-63 245.4 155 76.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 4.1e-63 245.0 156 75.0
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 4.1e-63 245.0 155 76.8
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 5.4e-63 244.6 165 72.7
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 5.4e-63 244.6 157 78.3
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 5.4e-63 244.6 162 74.7
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 7.1e-63 244.2 158 76.6
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 9.2e-63 243.8 149 81.2
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 9.2e-63 243.8 154 77.9
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 9.2e-63 243.8 155 78.7
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 2.1e-62 242.7 150 79.3
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 3.5e-62 241.9 162 74.1
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 4.6e-62 241.5 178 70.8
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 6.0e-62 241.1 165 73.3
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.3e-61 239.2 159 76.7
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 5.1e-61 238.0 159 76.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 6.6e-61 237.7 147 79.6
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 6.6e-61 237.7 159 73.6
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 8.6e-61 237.3 147 77.6
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.5e-60 236.5 155 74.2
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.5e-60 236.5 155 74.2
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 4.3e-60 235.0 159 73.6
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 4.3e-60 235.0 159 73.6
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 4.3e-60 235.0 147 76.9
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 5.6e-60 234.6 159 73.6
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.1e-59 232.6 159 73.0
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.1e-59 232.6 159 73.0
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.1e-59 232.6 140 81.4
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 2.8e-59 232.3 159 72.3
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 3.6e-59 231.9 159 72.3
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 4.7e-59 231.5 159 71.7
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 8.1e-59 230.7 159 72.3
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.1e-59 230.7 159 72.3
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.1e-59 230.7 159 72.3
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.4e-58 229.9 147 78.9
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 5.2e-58 228.0 159 71.1
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 6.8e-58 227.6 148 75.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.6e-57 225.7 157 71.3
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.3e-56 223.4 151 72.2
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.7e-56 223.0 192 63.0
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.2e-56 222.6 155 69.0
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.2e-55 218.8 159 71.7
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 5.4e-55 218.0 177 66.1
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.3e-53 213.4 160 70.0
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 3.6e-51 205.3 151 70.9
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.9e-50 201.1 163 65.0
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 3.8e-48 195.3 151 62.9
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 2.5e-44 182.6 162 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.5e-41 173.3 159 56.6
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 2.0e-41 172.9 111 78.4
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 3.8e-40 168.7 89 88.8
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 8.4e-40 167.5 120 70.0
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 3.2e-39 165.6 115 73.9
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 4.2e-39 165.2 89 85.4
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.8e-37 159.8 163 49.1
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.0e-37 159.1 158 59.5
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 7.4e-36 154.5 154 49.4
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 8.1e-35 151.0 258 39.9
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 2.4e-34 149.4 159 49.1
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 6.7e-29 131.3 88 75.0
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 6.2e-27 124.8 140 44.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.5e-20 102.8 74 68.9
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.5e-17 93.6 69 66.7
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 4.2e-15 85.5 64 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.0e-13 80.9 82 53.7
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.4e-13 80.5 49 77.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 5.1e-13 78.6 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 1.5e-12 77.0 45 80.0
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 1.1e-10 70.9 139 34.5
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.5e-09 67.0 37 86.5
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 1.0e-08 64.3 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-06 57.4 50 60.0


User provided reference genes

Program Settings