Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 5.8e-71 270.8 136 100.0
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 1.5e-42 176.4 137 71.5
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 9.3e-37 157.1 139 66.9
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.3e-35 152.5 123 69.1
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 1.1e-18 97.1 93 53.8
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 2.5e-18 95.9 137 44.5
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 9.7e-18 94.0 145 40.0
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.3e-17 93.6 88 47.7
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 4.8e-17 91.7 152 40.1
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 6.3e-17 91.3 65 69.2
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.4e-16 90.1 141 45.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.4e-16 90.1 110 47.3
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.4e-16 90.1 85 55.3
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 1.8e-16 89.7 87 56.3
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 3.1e-16 89.0 138 43.5
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 3.1e-16 89.0 76 59.2
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 4.1e-16 88.6 100 47.0
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 4.1e-16 88.6 134 43.3
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 5.3e-16 88.2 84 57.1
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 5.3e-16 88.2 126 45.2
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 5.3e-16 88.2 90 51.1
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 6.9e-16 87.8 113 47.8
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.5e-15 86.7 90 52.2
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.5e-15 86.7 136 39.0
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.0e-15 86.3 83 56.6
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.0e-15 86.3 84 51.2
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.0e-15 86.3 87 51.7
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.6e-15 85.9 61 65.6
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 2.6e-15 85.9 114 43.9
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 4.5e-15 85.1 64 64.1
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 4.5e-15 85.1 115 45.2
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 4.5e-15 85.1 83 54.2
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 5.9e-15 84.7 91 52.7
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 7.7e-15 84.3 98 51.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 7.7e-15 84.3 118 42.4
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 1.0e-14 84.0 133 42.9
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 1.0e-14 84.0 113 43.4
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 1.3e-14 83.6 88 51.1
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 2.2e-14 82.8 62 66.1
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 2.9e-14 82.4 88 51.1
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 2.9e-14 82.4 86 52.3
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 3.8e-14 82.0 84 52.4
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 3.8e-14 82.0 85 52.9
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 3.8e-14 82.0 63 61.9
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 5.0e-14 81.6 82 52.4
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 6.5e-14 81.3 64 62.5
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 6.5e-14 81.3 89 49.4
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 8.5e-14 80.9 138 39.9
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 1.1e-13 80.5 80 56.2
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.4e-13 80.1 80 56.2
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.4e-13 80.1 79 55.7
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.4e-13 80.1 86 50.0
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 1.9e-13 79.7 65 56.9
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.9e-13 79.7 58 62.1
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 2.5e-13 79.3 152 40.1
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.2e-13 79.0 88 53.4
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 3.2e-13 79.0 83 49.4
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 4.2e-13 78.6 74 50.0
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 4.2e-13 78.6 97 47.4
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.2e-13 78.6 80 55.0
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 4.2e-13 78.6 112 43.8
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.5e-13 78.2 79 55.7
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 5.5e-13 78.2 59 62.7
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.2e-12 77.0 65 52.3
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 1.6e-12 76.6 79 48.1
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 1.6e-12 76.6 79 48.1
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.6e-12 76.6 63 55.6
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.6e-12 76.6 63 54.0
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.6e-12 76.6 61 59.0
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.1e-12 76.3 79 48.1
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.1e-12 76.3 79 48.1
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.1e-12 76.3 79 48.1
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 2.1e-12 76.3 62 58.1
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 2.7e-12 75.9 135 41.5
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 3.6e-12 75.5 62 54.8
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 6.1e-12 74.7 58 63.8
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.4e-11 73.6 59 61.0
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.4e-11 73.6 59 61.0
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 1.8e-11 73.2 61 54.1
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 1.8e-11 73.2 58 60.3
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 3.0e-11 72.4 114 37.7
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 3.9e-11 72.0 63 49.2
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 5.1e-11 71.6 61 50.8
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 1.1e-10 70.5 77 49.4
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 5.7e-10 68.2 60 53.3
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 7.4e-10 67.8 47 63.8
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 9.7e-10 67.4 64 48.4
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 2.2e-09 66.2 51 52.9
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 2.2e-09 66.2 61 50.8
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 2.8e-09 65.9 86 45.3
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 2.8e-09 65.9 56 55.4
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 2.8e-09 65.9 83 41.0
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 6.3e-09 64.7 48 58.3
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 6.3e-09 64.7 55 56.4
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 6.3e-09 64.7 46 65.2
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.1e-08 62.4 52 53.8
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 2.0e-07 59.7 87 34.5


User provided reference genes

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