Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 4.7e-143 511.1 251 100.0
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.1e-118 428.7 250 85.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-100 369.0 211 86.3
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 9.9e-93 344.0 192 88.5
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.1e-91 340.5 240 70.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-89 333.6 248 67.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.3e-89 332.8 243 66.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.0e-89 332.4 192 87.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.1e-88 330.5 252 65.5
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.5e-88 330.1 240 68.8
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.3e-88 328.9 247 65.6
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.3e-88 328.6 247 65.6
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.6e-88 327.4 248 68.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.1e-87 326.2 224 72.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 8.1e-87 324.3 237 69.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-86 323.2 236 68.6
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.8e-86 323.2 240 68.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.8e-86 323.2 237 66.7
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.1e-86 322.4 250 65.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 5.3e-86 321.6 240 64.6
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.9e-86 321.2 240 68.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.2e-85 320.5 247 63.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-85 320.1 236 68.2
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.5e-85 320.1 240 66.7
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-85 319.7 240 68.8
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.5e-85 318.5 236 66.5
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 7.6e-85 317.8 248 65.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 7.6e-85 317.8 251 63.7
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 9.9e-85 317.4 253 64.4
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.7e-84 316.6 237 68.4
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.7e-84 316.6 240 66.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 8.4e-84 314.3 247 65.2
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-83 313.9 249 64.3
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 3.2e-83 312.4 249 63.5
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 4.2e-83 312.0 240 65.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 5.4e-83 311.6 245 64.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.4e-83 311.6 245 64.1
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 7.1e-83 311.2 239 66.1
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 9.3e-83 310.8 252 64.3
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.2e-82 310.5 251 62.2
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.6e-82 310.1 237 65.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.1e-82 309.7 240 65.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 3.5e-82 308.9 248 64.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.6e-82 308.5 247 64.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 7.9e-82 307.8 258 61.6
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.8e-81 306.6 248 63.3
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.8e-81 306.6 237 67.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.8e-81 306.6 243 63.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-80 303.9 255 61.6
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.1e-80 303.9 241 65.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.5e-80 302.8 226 68.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.3e-80 302.0 247 62.3
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 4.3e-80 302.0 241 64.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 5.6e-80 301.6 241 62.7
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.1e-79 299.7 241 63.9
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.8e-79 299.3 247 61.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.8e-79 299.3 228 65.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.8e-79 299.3 238 64.7
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.8e-79 299.3 244 63.9
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 4.8e-79 298.5 237 65.4
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 4.8e-79 298.5 237 65.4
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.8e-79 298.5 237 64.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.1e-79 297.7 248 62.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.1e-79 297.7 237 64.1
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.4e-78 296.2 255 60.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.0e-78 295.4 240 62.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.0e-78 295.4 240 62.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.0e-78 295.4 250 62.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 5.3e-78 295.0 235 62.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 9.0e-78 294.3 233 63.5
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 9.0e-78 294.3 248 62.5
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.2e-77 293.9 238 64.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-77 293.9 238 64.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.2e-77 293.9 240 61.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.2e-77 293.9 238 61.3
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.5e-77 293.5 244 60.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-77 293.5 237 62.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.0e-77 293.1 238 63.0
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.0e-77 293.1 239 61.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 2.6e-77 292.7 241 58.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.6e-77 292.7 251 60.2
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.5e-77 292.0 237 62.4
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 7.6e-77 291.2 239 61.5
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-76 290.8 241 61.8
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.9e-76 289.3 240 60.8
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 4.2e-75 285.4 239 61.5
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.5e-75 285.0 224 65.6
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.5e-75 285.0 250 60.4
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 7.1e-75 284.6 245 59.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 7.1e-75 284.6 239 61.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 7.1e-75 284.6 271 56.5
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 9.3e-75 284.3 272 56.6
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.1e-74 283.1 181 74.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 7.9e-74 281.2 274 55.8
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.0e-73 280.8 191 72.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-73 280.4 180 75.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.3e-73 279.6 271 55.4
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.1e-72 277.3 244 60.7
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.5e-72 276.2 240 58.8
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 5.7e-72 275.0 223 63.7
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.6e-71 273.5 251 59.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.4e-70 269.6 242 59.1
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 9.0e-70 267.7 187 71.7
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 9.0e-70 267.7 190 68.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 9.0e-70 267.7 248 55.2
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-69 266.5 187 69.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.0e-69 266.5 237 56.1
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.6e-69 266.2 328 47.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 4.5e-69 265.4 182 70.9
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 4.5e-69 265.4 187 70.6
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.5e-69 265.4 183 71.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.5e-69 265.4 250 56.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.0e-68 264.2 178 73.0
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.7e-68 263.5 222 59.5
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.7e-68 263.5 263 55.9
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.0e-68 261.9 263 55.5
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.9e-67 260.0 214 64.0
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 7.2e-67 258.1 237 59.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.6e-66 255.4 273 52.4
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.3e-65 253.8 187 67.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.8e-65 253.4 184 65.2
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.8e-65 253.4 184 65.8
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.1e-65 251.9 237 53.2
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 6.7e-65 251.5 171 73.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 8.7e-65 251.1 176 69.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 4.3e-64 248.8 237 54.9
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 9.7e-64 247.7 173 69.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.7e-64 247.7 182 67.0
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.7e-64 247.7 178 68.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.7e-63 245.7 246 55.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 4.8e-63 245.4 183 68.9
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.4e-62 243.0 172 69.8
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 2.4e-62 243.0 172 69.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.6e-61 239.6 164 69.5
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 5.0e-60 235.3 201 61.2
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.0e-60 235.3 187 63.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 7.2e-59 231.5 169 64.5
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.0e-57 226.1 235 52.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 6.7e-57 224.9 244 48.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.8e-55 218.8 169 65.1
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-54 216.9 140 75.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.9e-54 214.9 130 79.2
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.4e-51 207.2 202 55.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.5e-51 206.5 142 68.3
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.8e-49 200.3 149 64.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-47 193.0 228 49.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 2.8e-47 193.0 228 49.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.4e-46 189.9 122 68.9
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.0e-44 184.5 150 62.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.1e-38 162.9 208 43.8
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.0e-34 148.3 218 40.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-29 134.0 118 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 3.7e-23 112.8 98 56.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.9e-21 105.5 159 42.1
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.1e-19 101.3 111 51.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.0e-17 92.8 166 35.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.1e-14 82.8 67 61.2
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 5.4e-14 82.4 65 60.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.3e-12 77.0 48 62.5


User provided reference genes

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