Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 0.0e+00 3472.2 1771 100.0
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 2584.7 1759 77.7
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 0.0e+00 2416.7 1752 73.7
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 0.0e+00 2401.7 1761 73.3
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1203.0 1821 43.5
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1201.4 1702 45.0
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1181.0 1805 43.4
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1105.9 1752 41.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1098.6 1792 42.1
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 9.2e-310 1067.8 1784 41.1
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 3.9e-308 1062.4 1784 40.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 2.5e-307 1059.7 1795 41.2
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.9e-300 1035.8 1786 40.4
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.5e-299 1033.9 1860 39.0
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 5.2e-297 1025.4 1589 42.2
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 6.0e-293 1011.9 1789 38.6
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 2.5e-291 1006.5 1791 39.1
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 2.6e-288 996.5 1719 40.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 2.9e-287 993.0 1789 39.4
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.0e-284 984.6 1782 39.0
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.7e-284 983.8 1796 38.9
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 4.4e-280 969.1 1794 39.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.3e-279 967.6 1803 38.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.4e-278 963.4 1799 39.7
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.1e-278 961.8 1797 38.3
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.6e-277 960.7 1814 38.5
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.0e-277 958.7 1812 38.2
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 7.8e-277 958.4 1794 39.6
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.7e-276 957.2 1763 37.5
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.6e-274 950.7 1765 37.7
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.8e-274 949.9 1801 38.1
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 6.9e-273 945.3 1813 37.7
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 5.8e-272 942.2 1797 38.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 9.3e-270 934.9 1394 42.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 7.8e-269 931.8 1846 37.3
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.0e-260 904.8 1725 37.3
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.0e-260 904.8 1725 37.3
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.8e-258 896.7 1753 37.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 4.8e-258 896.0 1761 36.8
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 3.1e-257 893.3 1767 36.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.0e-256 890.6 1794 37.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.9e-254 884.0 1748 37.5
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.5e-246 857.1 1793 35.2
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.2e-242 842.0 1790 35.5
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 2.2e-239 833.9 1259 40.3
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 3.9e-236 823.2 1806 34.8
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 6.9e-233 812.4 1263 40.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.0e-232 810.8 2108 32.1
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 3.0e-228 797.0 1299 38.1
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 3.9e-228 796.6 1372 38.8
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.2e-226 790.8 1784 34.2
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.5e-224 783.5 1779 34.1
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.3e-223 781.6 1768 34.9
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.1e-222 778.5 1271 39.1
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 3.6e-221 773.5 1663 34.8
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.6e-219 767.3 1792 34.3
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 2.2e-218 764.2 1779 33.0
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 7.0e-217 759.2 1779 34.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 2.6e-216 757.3 1753 34.9
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.7e-215 754.6 1700 34.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.1e-209 735.3 1684 34.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 3.8e-207 726.9 1844 32.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 4.0e-204 716.8 1787 34.4
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.5e-203 714.9 809 48.8
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 4.4e-203 713.4 1753 33.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.8e-202 710.7 1738 33.1
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 7.0e-201 706.1 1866 31.9
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.0e-199 702.2 1747 32.8
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.5e-198 698.4 1745 32.4
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.5e-198 697.6 1788 33.3
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 2.8e-197 694.1 1665 33.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 3.7e-194 683.7 1773 32.9
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 6.3e-194 682.9 1736 33.0
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.2e-193 680.6 1751 33.1
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.5e-190 671.0 1737 32.8
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.1e-189 667.9 1714 31.0
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.7e-186 658.3 1789 31.2
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.7e-186 658.3 833 43.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 4.9e-186 656.8 1741 32.2
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 8.3e-186 656.0 1740 32.0
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 4.1e-185 653.7 1298 35.4
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.6e-184 651.7 1737 33.4
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 5.6e-182 643.3 1828 30.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.4e-179 633.6 1514 34.1
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.3e-174 617.1 759 45.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.3e-172 611.3 1743 31.1
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.3e-167 594.7 682 47.1
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 9.6e-166 589.3 639 49.9
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.9e-158 565.1 662 47.4
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.6e-157 560.8 1779 29.7
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 6.4e-146 523.5 1884 28.3
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 6.4e-146 523.5 1762 29.1
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.3e-141 509.2 1311 31.6
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.9e-134 485.3 1304 31.6
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.2e-125 455.3 1374 32.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.0e-114 419.9 895 31.5
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 3.8e-114 417.9 1135 33.9
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.2e-109 400.2 407 50.1
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.6e-80 306.2 1215 28.3
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.0e-79 302.0 657 31.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 5.4e-76 291.2 559 36.1
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 7.0e-76 290.8 621 34.5
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.9e-73 282.7 894 28.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 5.2e-71 274.6 537 32.2
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 6.4e-69 267.7 413 36.1
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.6e-54 219.2 745 31.5
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 7.3e-49 201.1 833 23.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 9.9e-46 190.7 666 25.5
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 6.4e-45 188.0 667 32.1
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.0e-42 180.6 638 28.8
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.9e-41 176.4 763 26.1
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 6.7e-34 151.4 129 55.8
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.1e-27 129.8 755 26.2
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 2.3e-26 126.3 385 34.0
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 4.0e-23 115.5 444 31.5
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.0e-22 113.2 124 41.9
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 2.1e-19 103.2 431 28.8
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 8.7e-18 97.8 348 31.6
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.1e-12 80.9 92 46.7
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 4.6e-11 75.5 58 65.5
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.3e-10 73.9 283 29.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 7.4e-09 68.2 79 43.0
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 9.7e-09 67.8 351 28.2
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 9.7e-09 67.8 311 29.9
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.6e-08 67.0 84 41.7
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.8e-07 63.5 226 38.1


User provided reference genes

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