Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.5e-175 618.2 326 100.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.6e-119 432.2 350 75.1
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.8e-118 429.9 353 75.4
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 3.0e-118 429.1 350 75.1
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 4.2e-51 206.1 333 46.2
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-50 204.5 332 47.9
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.6e-50 202.6 330 46.7
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.3e-49 200.3 325 45.8
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.0e-45 187.2 335 44.2
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 3.4e-45 186.4 332 43.7
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.4e-45 186.4 332 44.6
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 7.6e-45 185.3 330 41.8
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-44 184.5 270 46.7
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.7e-44 184.1 320 42.2
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.7e-44 184.1 330 41.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.9e-44 183.3 332 42.2
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.0e-44 182.6 328 44.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.9e-43 180.6 325 44.6
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.6e-42 177.6 321 43.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.1e-42 177.2 331 41.7
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-42 177.2 323 44.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.7e-42 176.8 332 43.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 3.6e-42 176.4 324 42.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 3.6e-42 176.4 333 41.1
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 6.1e-42 175.6 315 43.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.0e-41 174.9 325 44.6
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.1e-40 171.4 321 43.3
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.7e-40 168.3 325 41.8
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.7e-40 168.3 325 41.8
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.7e-39 167.5 338 40.8
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.8e-39 166.8 325 41.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-38 164.5 337 42.7
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.8e-38 164.1 316 42.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.2e-37 161.4 336 42.0
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.6e-37 160.2 324 41.4
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 3.4e-37 159.8 362 38.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.3e-36 157.9 329 38.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.7e-36 157.5 279 45.9
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 5.0e-36 156.0 334 38.9
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.1e-35 154.8 332 40.1
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 7.2e-35 152.1 325 40.6
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.2e-34 151.4 317 40.1
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 3.6e-34 149.8 298 39.3
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.7e-34 149.4 313 39.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.9e-34 148.7 316 40.2
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-33 148.3 315 41.3
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.8e-33 147.5 321 39.3
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-33 147.1 362 37.3
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 3.0e-33 146.7 320 40.9
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.9e-33 146.4 368 38.9
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 6.7e-33 145.6 311 37.6
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-32 144.4 317 40.7
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.3e-32 143.3 344 37.8
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 5.7e-32 142.5 341 39.3
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 9.7e-32 141.7 342 37.7
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 9.7e-32 141.7 342 37.7
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.3e-31 141.4 317 38.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.3e-31 141.4 317 38.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.7e-31 141.0 329 38.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.8e-31 139.4 317 39.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.2e-29 134.8 336 36.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.5e-29 134.4 337 36.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.5e-29 132.9 341 37.0
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.2e-28 130.6 340 36.2
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.2e-28 130.6 316 37.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.2e-28 130.6 316 37.0
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.9e-28 130.2 325 39.1
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.9e-28 130.2 351 36.8
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 8.5e-28 128.6 331 37.8
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.5e-27 127.1 310 38.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 4.2e-27 126.3 321 36.1
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.5e-27 125.9 319 36.4
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.5e-27 125.9 335 35.2
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.2e-27 125.6 333 37.5
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.1e-26 124.0 239 42.3
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 3.6e-26 123.2 344 33.4
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.6e-26 123.2 350 35.4
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.4e-25 121.3 326 39.3
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.3e-25 120.6 357 35.3
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 8.8e-25 118.6 340 35.3
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.4e-24 116.3 305 35.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.7e-23 114.4 324 34.9
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.7e-23 114.4 343 34.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 3.7e-23 113.2 331 36.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.7e-23 113.2 331 36.0
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.2e-23 112.1 330 35.8
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.2e-23 112.1 343 34.7
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.2e-23 112.1 343 34.7
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.2e-23 112.1 343 34.7
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.2e-23 112.1 222 41.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.1e-22 111.7 330 35.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-22 111.3 324 34.3
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.1e-22 110.2 322 35.7
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.3e-22 109.4 317 35.3
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.3e-22 109.4 332 35.5
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 5.9e-21 105.9 329 36.8
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.3e-20 104.8 333 35.7
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.7e-20 104.4 331 33.8
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.2e-20 104.0 333 33.3
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.8e-20 103.2 196 43.9
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.1e-19 101.7 350 29.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 7.2e-19 99.0 325 34.8
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 9.4e-19 98.6 341 30.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-18 98.2 243 37.4
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.2e-18 98.2 348 28.7
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 2.1e-18 97.4 362 32.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.1e-18 97.4 321 32.7
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-18 97.4 343 32.1
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.7e-18 97.1 341 31.4
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.6e-18 96.7 313 32.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.6e-18 96.7 376 33.5
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 3.6e-18 96.7 339 29.8
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 4.7e-18 96.3 342 31.3
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-17 95.1 335 30.7
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.0e-17 95.1 335 30.7
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.8e-17 94.4 341 29.9
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.3e-17 94.0 343 30.3
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 4.0e-17 93.2 342 31.6
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.2e-16 91.7 340 29.4
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.2e-16 91.7 315 32.1
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-16 91.3 338 31.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-16 90.9 342 31.0
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.6e-16 90.5 339 29.8
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.3e-16 90.1 325 30.2
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 3.3e-16 90.1 314 32.5
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 4.4e-16 89.7 342 30.1
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 7.5e-16 89.0 341 30.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.3e-15 88.2 331 29.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 2.2e-15 87.4 346 28.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 6.3e-15 85.9 344 30.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 8.2e-15 85.5 307 30.3
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.4e-14 84.7 272 31.2
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.1e-14 83.6 342 30.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-13 81.6 225 39.1
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.0e-12 78.6 304 31.6
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.0e-12 78.6 317 30.0
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 8.5e-12 75.5 325 29.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.5e-11 74.7 296 30.4
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.6e-10 70.1 267 30.7
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 1.4e-09 68.2 264 30.7
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 5.2e-09 66.2 301 29.6
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 4.4e-08 63.2 323 27.2
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.8e-08 62.0 326 28.8
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.3e-07 61.6 361 28.8
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.2e-07 60.8 389 28.5
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.8e-07 60.5 306 31.4
Actinidia32178 Actinidia chinensis HOM05D001488 ORTHO05D001456 1.8e-06 57.8 238 32.4
Aqoxy7G01095 Aquilegia oxysepala HOM05D001488 ORTHO05D001456 3.1e-06 57.0 248 28.6
Aqoxy1G01010 Aquilegia oxysepala HOM05D001488 ORTHO05D001456 7.0e-06 55.8 249 28.9


User provided reference genes

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