Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 0.0e+00 1197.2 676 100.0
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 2.0e-289 998.8 676 82.7
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 2.5e-276 955.3 678 80.7
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 8.1e-275 950.3 680 80.7
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 2.3e-192 676.4 668 59.0
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 9.9e-188 661.0 668 60.3
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 8.3e-187 657.9 664 60.1
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 5.4e-186 655.2 671 59.8
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 1.9e-183 646.7 675 59.9
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 1.2e-182 644.0 663 61.2
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 1.2e-182 644.0 666 61.4
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 4.7e-182 642.1 669 59.5
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 1.1e-181 641.0 671 59.8
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 2.0e-180 636.7 668 60.5
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 4.4e-180 635.6 668 55.4
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.7e-177 626.3 675 60.7
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 3.5e-177 625.9 667 58.6
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 5.1e-176 622.1 671 58.3
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.1e-175 620.9 671 57.8
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 4.3e-175 619.0 666 56.6
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 5.6e-175 618.6 674 54.9
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 3.6e-174 615.9 667 56.4
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 1.5e-172 610.5 671 59.3
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.9e-171 606.3 669 54.9
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 8.4e-171 604.7 664 56.3
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 5.4e-170 602.1 667 54.4
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.2e-169 600.9 675 55.0
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 2.1e-169 600.1 676 53.7
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 2.7e-169 599.7 655 56.6
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 3.5e-169 599.4 667 58.3
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.7e-168 597.0 651 58.1
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.7e-168 597.0 667 52.3
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 8.7e-168 594.7 663 58.2
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 8.7e-168 594.7 673 53.3
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 3.3e-167 592.8 663 56.4
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 1.6e-166 590.5 670 54.3
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 2.4e-165 586.6 669 56.1
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 3.1e-165 586.3 665 56.1
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 6.9e-165 585.1 695 54.4
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 1.1e-162 577.8 673 54.5
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.2e-161 574.3 690 55.4
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 2.1e-161 573.5 665 55.6
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 2.7e-161 573.2 676 56.7
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 4.6e-161 572.4 688 54.8
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 1.1e-159 567.8 665 53.4
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 9.6e-159 564.7 512 61.1
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 1.6e-158 563.9 670 56.7
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 2.8e-158 563.1 682 53.4
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 8.1e-158 561.6 665 53.2
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 5.3e-157 558.9 664 53.3
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 5.8e-156 555.4 680 55.6
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 6.5e-155 552.0 665 55.3
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 8.4e-155 551.6 675 55.4
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 1.1e-154 551.2 662 55.1
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.5e-154 548.9 638 57.8
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 7.1e-154 548.5 719 50.9
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 7.1e-154 548.5 664 55.1
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 2.1e-153 547.0 662 51.5
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 2.1e-153 547.0 662 52.1
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 2.7e-153 546.6 653 57.0
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.7e-153 546.6 675 53.6
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 1.8e-152 543.9 686 54.1
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.5e-151 540.8 510 60.8
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 1.9e-151 540.4 671 51.0
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 1.9e-151 540.4 688 53.8
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.5e-151 540.0 527 57.3
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.7e-151 538.9 510 60.6
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 9.6e-151 538.1 667 54.4
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 4.8e-150 535.8 575 55.1
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 9.0e-149 531.6 694 48.0
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 1.2e-148 531.2 518 58.3
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 2.6e-148 530.0 662 52.3
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 3.8e-147 526.2 674 53.3
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 3.8e-147 526.2 659 52.4
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 4.1e-141 506.1 530 54.3
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 2.6e-140 503.4 672 49.6
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 7.7e-140 501.9 639 48.8
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 6.5e-139 498.8 578 57.3
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 2.5e-135 486.9 679 49.9
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 9.7e-135 485.0 657 50.4
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.4e-133 481.1 693 48.1
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 7.7e-132 475.3 643 46.5
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 5.5e-130 469.2 679 50.4
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 5.1e-128 462.6 519 50.1
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 5.7e-127 459.1 507 51.3
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 2.8e-126 456.8 508 52.6
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 1.5e-124 451.1 509 51.5
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 3.8e-123 446.4 510 51.6
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 8.5e-123 445.3 577 52.5
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 2.5e-122 443.7 507 51.1
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.1e-117 428.3 688 43.2
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.3e-115 421.4 505 50.1
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.3e-115 421.4 505 50.1
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 1.3e-115 421.4 503 49.9
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 5.0e-115 419.5 590 50.8
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.6e-113 413.3 510 50.6
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 1.8e-109 401.0 512 47.5
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 5.0e-107 392.9 439 51.7
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 7.5e-95 352.4 377 53.6
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 5.9e-92 342.8 488 46.9
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 1.2e-89 335.1 614 42.8
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 5.2e-88 329.7 369 53.7
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 2.5e-82 310.8 626 42.5
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 8.9e-80 302.4 525 39.0
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.9e-66 258.1 297 51.9
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 7.3e-66 256.1 510 37.3
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.8e-56 224.9 223 55.2
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 2.3e-51 208.0 501 32.5
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 3.5e-44 184.1 231 46.8
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 5.1e-35 153.7 464 36.0
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 2.0e-31 141.7 578 27.9
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.3e-25 122.5 107 58.9
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 5.3e-24 117.1 167 46.1
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 2.6e-15 88.2 191 45.5
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.4e-11 75.9 50 70.0
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 7.4e-10 70.1 91 45.1


User provided reference genes

Program Settings