Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-292 1008.8 517 100.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.9e-269 931.0 517 91.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 8.7e-269 929.9 517 91.5
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 5.5e-263 910.6 517 90.1
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 5.0e-224 781.2 525 77.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.2e-223 778.1 522 78.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.6e-222 776.2 523 78.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.1e-222 775.8 524 76.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.1e-222 775.8 525 76.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.1e-218 760.4 524 76.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.7e-216 756.1 520 75.6
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.9e-216 755.4 525 75.8
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 6.5e-216 754.2 525 75.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.2e-215 750.7 523 73.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.6e-214 748.4 523 74.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 4.7e-214 748.0 547 72.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 8.0e-214 747.3 547 72.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 8.0e-214 747.3 530 74.9
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-213 746.5 518 73.6
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.2e-213 744.6 515 73.8
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.2e-212 743.4 525 74.7
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-212 742.3 515 73.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.4e-212 741.9 524 73.7
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 5.7e-212 741.1 528 73.9
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 5.7e-212 741.1 529 73.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 9.8e-212 740.3 524 74.0
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-211 739.6 529 72.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.0e-209 732.6 591 67.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.9e-208 728.8 526 72.8
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.3e-207 725.3 522 73.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.3e-207 725.3 522 73.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.3e-207 725.3 433 83.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-206 722.6 523 72.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-206 722.6 539 70.7
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.4e-205 719.9 519 71.5
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.0e-205 718.4 453 81.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 9.8e-204 713.8 525 72.2
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.2e-203 712.6 462 76.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 3.7e-203 711.8 532 70.7
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 4.9e-203 711.4 452 80.3
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.9e-203 711.4 518 70.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.1e-202 710.3 477 76.1
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 5.4e-202 708.0 470 75.1
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 7.0e-202 707.6 473 76.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.0e-201 706.1 525 69.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 5.9e-201 704.5 528 69.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.7e-200 703.0 461 77.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.6e-199 698.0 537 69.1
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 9.5e-199 697.2 535 70.3
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.6e-198 696.4 503 72.2
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.4e-196 688.7 526 69.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 4.4e-196 688.3 460 74.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 9.8e-196 687.2 520 71.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.3e-195 686.8 433 79.7
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.3e-195 686.8 524 70.4
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.2e-195 686.0 431 78.7
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.4e-194 682.6 534 65.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 3.2e-194 682.2 521 69.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.2e-193 680.2 531 67.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.7e-192 676.4 528 70.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.0e-192 674.9 478 69.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 5.6e-191 671.4 402 82.8
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.6e-191 671.4 530 67.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-189 667.2 524 67.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.3e-187 660.2 528 67.0
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.9e-187 658.3 500 67.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.4e-186 656.0 520 66.5
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.1e-184 648.3 528 66.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.1e-183 647.1 534 65.2
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.5e-183 646.7 522 66.5
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 6.8e-181 637.9 482 67.0
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.2e-180 637.1 540 62.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 3.4e-180 635.6 527 66.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.2e-179 632.9 533 65.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.8e-179 632.1 541 62.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-178 630.6 528 64.8
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-178 630.2 402 77.1
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.2e-177 627.1 533 64.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.6e-177 626.7 471 68.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 3.5e-177 625.5 809 48.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-176 623.6 532 63.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.3e-176 622.9 529 63.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.5e-175 619.4 529 63.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.3e-175 619.0 528 63.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.3e-175 619.0 528 63.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 7.3e-175 617.8 432 74.3
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.3e-175 617.8 410 73.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.2e-174 617.1 484 67.1
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 4.7e-174 615.1 403 76.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.8e-173 613.2 527 63.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 4.0e-173 612.1 548 61.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 4.0e-173 612.1 392 78.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.4e-165 587.0 451 65.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.4e-165 586.3 540 59.1
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.6e-161 573.5 615 53.2
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.1e-160 568.5 467 63.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.7e-160 567.8 559 56.2
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.3e-159 565.5 484 62.2
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 4.3e-159 565.5 493 61.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 9.6e-159 564.3 349 82.2
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-158 563.9 508 61.4
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.1e-158 563.1 481 63.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.0e-157 558.9 350 79.1
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.3e-152 543.1 555 56.8
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-151 540.8 404 68.8
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.5e-147 525.0 537 57.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 4.2e-138 495.7 453 57.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.9e-137 491.5 472 54.0
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.2e-131 473.4 541 53.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.0e-128 464.5 437 55.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.3e-126 455.3 452 56.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 2.5e-122 443.4 474 49.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 3.3e-119 433.0 451 51.0
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-118 430.6 391 60.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.4e-117 426.8 482 51.7
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.7e-95 352.4 278 69.8
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 5.9e-92 342.4 440 44.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 2.5e-90 337.0 401 51.9
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 5.2e-88 329.3 216 73.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.2e-87 328.2 441 41.5
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 4.4e-87 326.2 299 58.5
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.4e-79 300.1 555 36.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-78 297.7 366 48.4
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.4e-71 273.1 233 67.0
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 9.2e-61 238.8 187 66.3
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-54 218.4 159 66.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.7e-51 208.0 204 55.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 3.3e-50 203.8 267 46.8
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.8e-48 198.0 449 36.3
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-47 195.3 264 45.8
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-46 191.4 246 46.7
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.5e-39 168.3 116 71.6
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.6e-39 167.5 142 66.2
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-38 165.2 371 34.2
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 7.1e-37 159.5 250 42.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.1e-37 159.5 259 42.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-36 158.3 134 66.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.9e-36 156.0 113 74.3
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 7.9e-36 156.0 129 63.6
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-35 155.2 113 74.3
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.1e-34 152.1 243 42.4
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 4.3e-34 150.2 167 53.9
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 8.2e-33 146.0 97 74.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 4.0e-32 143.7 102 68.6
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.9e-29 134.8 112 64.3
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.0e-28 129.8 96 66.7
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.9e-28 129.4 133 50.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.3e-25 122.1 133 58.6
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-24 116.7 79 73.4
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.9e-22 110.9 221 38.0
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 6.5e-22 109.8 221 38.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.5e-22 109.4 77 77.9
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 3.2e-21 107.5 234 35.9
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.0e-18 98.2 83 65.1
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.4e-16 91.3 94 50.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-15 89.0 62 69.4
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.6e-15 87.8 62 69.4
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.9e-14 84.3 136 32.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.2e-13 80.5 84 52.4
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.5e-13 80.1 97 55.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 1.4e-08 65.5 45 73.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 1.4e-08 65.5 45 73.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 1.4e-08 65.5 45 73.3
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.5e-07 62.0 252 27.0
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 8.5e-06 56.2 43 74.4


User provided reference genes

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