Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 2140.2 1127 100.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1986.1 1131 91.6
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1979.1 1130 91.1
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1937.9 1101 91.4
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1895.2 1128 87.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1774.6 1130 80.5
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1755.0 1130 79.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1749.2 1128 79.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1747.6 1135 79.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1744.2 1127 79.5
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1744.2 1136 79.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1743.0 1127 80.0
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1742.2 1129 79.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1742.2 1129 80.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1736.9 1137 78.8
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1735.7 1127 79.2
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1734.2 1130 79.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1733.0 1132 79.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1733.0 1134 80.2
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1731.8 1134 79.2
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1728.4 1127 78.7
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1726.5 1129 79.9
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1724.5 1127 78.7
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1723.0 1128 78.3
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1722.6 1129 79.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1722.2 1127 78.5
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1721.1 1127 78.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1716.4 1136 78.0
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1715.7 1127 78.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1715.3 1127 77.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1710.3 1134 77.4
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1709.9 1128 76.7
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1706.4 1128 76.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1696.8 1134 78.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1696.0 1141 76.8
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1692.9 1127 77.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1689.5 1134 78.1
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1687.2 1127 76.9
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1685.6 1180 74.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1684.5 1128 76.5
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1680.6 1132 76.1
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1678.7 1127 76.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1674.4 1130 76.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1655.2 1135 75.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1130 73.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1644.8 1136 75.3
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1641.7 1128 74.6
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1636.7 1127 75.2
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1635.5 1132 73.9
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1632.5 1130 75.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1127 74.5
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1628.2 1132 74.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1134 74.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1609.7 1135 73.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1607.0 1131 72.5
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1602.0 1130 73.0
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1601.3 1137 72.3
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1027 78.4
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1587.4 1136 72.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1127 72.8
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1583.9 1129 73.1
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1583.2 1141 71.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1580.5 1009 81.2
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1576.2 1131 72.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1127 72.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1132 71.1
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1132 71.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1132 70.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1565.8 1129 71.7
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1147 70.9
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1147 70.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1563.9 1134 71.8
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1559.3 1129 71.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1557.7 1132 70.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1557.0 1129 71.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1555.0 1132 70.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1550.4 1130 71.5
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1130 70.4
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1549.3 1133 69.7
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1134 70.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1134 69.9
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1134 69.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1134 70.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1540.0 1077 73.3
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1526.9 1133 68.6
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1526.5 1131 69.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1100 71.3
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1134 68.7
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1518.1 1134 68.5
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1514.2 1133 68.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1506.9 1133 68.0
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1497.3 1077 71.6
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1493.8 1070 72.3
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1488.0 1032 73.5
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 921 80.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1410.6 1132 66.2
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1401.7 1148 64.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1398.3 1126 65.9
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1393.6 922 77.2
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1390.6 1094 67.1
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1367.1 1123 63.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1328.9 1087 63.2
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1294.3 883 74.6
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1293.9 1119 59.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1289.2 888 73.8
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1255.0 822 79.9
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1134.0 938 64.4
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1125.5 795 74.6
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1090.9 1071 52.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 3.9e-306 1055.0 1086 49.8
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 7.4e-297 1024.2 669 78.2
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.2e-296 1022.7 1073 48.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.8e-288 995.0 1065 50.0
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 6.9e-287 991.1 759 67.5
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 2.1e-251 873.2 604 75.0
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 7.0e-247 858.2 939 53.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.1e-214 750.4 624 61.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.3e-212 743.0 1095 39.9
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 5.1e-165 586.3 421 72.9
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-157 560.8 366 76.8
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.7e-145 520.8 436 65.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 7.3e-119 433.0 354 63.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.6e-100 369.8 318 62.6
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.4e-90 337.0 334 61.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.6e-89 335.5 1206 27.3
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.1e-88 330.5 313 59.1
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 6.6e-88 330.1 1147 28.0
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.5e-79 301.6 364 47.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.2e-66 258.1 318 50.9
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.5e-65 254.6 328 46.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 3.5e-36 158.3 150 64.0
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 3.5e-36 158.3 100 83.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.7e-30 138.3 667 22.6
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-29 136.0 85 83.5
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 2.7e-28 132.1 147 57.8
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.3e-27 129.8 85 80.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-22 112.1 72 73.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.4e-21 109.8 68 73.5
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.6e-07 62.4 45 73.3
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 2.2e-06 59.3 73 46.6


User provided reference genes

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